PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39858_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 328aa    MW: 36819.5 Da    PI: 9.1687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39858_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.3e-14261310255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr ++ +g+ +AeIrdp     +  +r++lg+f+tae Aa+a+++a +k++g
  Cotton_A_39858_BGI-A2_v1.0 261 RYRGVRKRS-WGKRAAEIRDP-----HkaARVWLGTFDTAEAAARAYEEATLKFKG 310
                                 7*****888.9999******7.....337*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
Gene3DG3DSA:2.60.120.2005.0E-10117244IPR013320Concanavalin A-like lectin/glucanase domain
PROSITE profilePS5176228.85321215IPR000757Glycoside hydrolase family 16
CDDcd021762.77E-13322231No hitNo description
SuperFamilySSF498997.24E-6927236IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF007223.3E-6028207IPR000757Glycoside hydrolase family 16
PROSITE patternPS010340101111IPR008263Glycoside hydrolase, family 16, active site
SMARTSM003802.2E-29261324IPR001471AP2/ERF domain
PROSITE profilePS5103222.787261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-28261319IPR001471AP2/ERF domain
PfamPF008475.8E-8261310IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-18261319IPR016177DNA-binding domain
PRINTSPR003677.0E-10262273IPR001471AP2/ERF domain
CDDcd000183.13E-11270318No hitNo description
PRINTSPR003677.0E-10284300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSSSGLKFTF LMPLMVACLM AASASNFHSD FEITWGDGRG KIVNNREVLT LSLDKASGSG  60
FQSKNEYLFG KIDMQLKLVP DNSAGTVTAY YLSSKGSTWD EIDFEFLGNL SGDPYILHTN  120
VFSQGKGNRD QQFYLWFDPT ADFHTYSILW NPQRIIFSVD GTPIREFKNM ESLGVPFTKN  180
QPMRIYSSLW NADDWATRGG FVKTDWTQAP FTASYRNFNA DACVWSNGAS SFAEETTSIV  240
APAAETVAAA AYEETGERRR RYRGVRKRSW GKRAAEIRDP HKAARVWLGT FDTAEAAARA  300
YEEATLKFKG SRAKLNFPKL VRLVPQSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1umz_A4e-852722317213XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1umz_B4e-852722317213XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_A4e-852722317213XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_B4e-852722317213XYLOGLUCAN ENDOTRANSGLYCOSYLASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERRRRY
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and brassinolide. Up-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:11673616}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628818.11e-174PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23
SwissprotQ389101e-129XTH23_ARATH; Probable xyloglucan endotransglucosylase/hydrolase protein 23
TrEMBLA0A2P5YIW20.0A0A2P5YIW2_GOSBA; Uncharacterized protein
STRINGGorai.005G113400.11e-167(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-16ERF family protein
Publications ? help Back to Top
  1. Yokoyama R,Nishitani K
    A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis.
    Plant Cell Physiol., 2001. 42(10): p. 1025-33
    [PMID:11673616]
  2. Rose JK,Braam J,Fry SC,Nishitani K
    The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
    Plant Cell Physiol., 2002. 43(12): p. 1421-35
    [PMID:12514239]
  3. Borderies G, et al.
    Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis.
    Electrophoresis, 2003. 24(19-20): p. 3421-32
    [PMID:14595688]
  4. Charmont S,Jamet E,Pont-Lezica R,Canut H
    Proteomic analysis of secreted proteins from Arabidopsis thaliana seedlings: improved recovery following removal of phenolic compounds.
    Phytochemistry, 2005. 66(4): p. 453-61
    [PMID:15694452]
  5. Geisler-Lee J, et al.
    Poplar carbohydrate-active enzymes. Gene identification and expression analyses.
    Plant Physiol., 2006. 140(3): p. 946-62
    [PMID:16415215]
  6. Swarup K, et al.
    The auxin influx carrier LAX3 promotes lateral root emergence.
    Nat. Cell Biol., 2008. 10(8): p. 946-54
    [PMID:18622388]
  7. Bischoff V,Cookson SJ,Wu S,Scheible WR
    Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings.
    J. Exp. Bot., 2009. 60(3): p. 955-65
    [PMID:19269997]
  8. Xu W,Campbell P,Vargheese AK,Braam J
    The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression.
    Plant J., 1996. 9(6): p. 879-89
    [PMID:8696366]