PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39839_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 392aa    MW: 42567.7 Da    PI: 8.428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39839_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.3e-21168217255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a+++a++k++g
  Cotton_A_39839_BGI-A2_v1.0 168 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALKFRG 217
                                 7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-14168217IPR001471AP2/ERF domain
PROSITE profilePS5103225.963168225IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23168226IPR016177DNA-binding domain
SMARTSM003806.1E-39168231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-33168226IPR001471AP2/ERF domain
PRINTSPR003671.0E-11169180IPR001471AP2/ERF domain
CDDcd000186.82E-16176227No hitNo description
PRINTSPR003671.0E-11191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MCLIDKVAHR GGSSGYARFP TAGDAGGADE QQEYYSQSSR NRQVNQAMMQ QRNQGVMFLG  60
SQSQASEMST MVSALAHVAS GQRAGDWGYG GNVAGEVSSG FGLSGPSADS PSASGLWIGQ  120
KRGREDETGA QLVESAAPRV QRSFADFRGS HADSSSAATS ETGERRRRYR GVRQRPWGKW  180
AAEIRDPQKA ARVWLGTFDT AEAAARAYDE AALKFRGSRA KLNFPELVRL VPQPMQNFPA  240
TQTSVSSSLT TQFRPPYSTP LPSLYQSQHL HSPTADMLRD YWQYSQLLQS STDFHGQEAT  300
SLMEQMMQSS QLPNFQHSFL SSSLSPFPSS FVAPSSAASS SSSSSASFPL VFGEHQQFDV  360
FRQPSNQSQA SGSDFPVPPW SHPSHYPSST GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22169228666ATERF1
3gcc_A1e-22169228666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERRRRY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5823874e-46JX582387.1 Gossypium hirsutum clone NBRI_GE15207 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605191.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U8PC890.0A0A1U8PC89_GOSHI; ethylene-responsive transcription factor ABR1-like
STRINGGorai.009G255400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-20ERF family protein