PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_39756_BGI-A2_v1.0 | ||||||||
Common Name | F383_01607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 653aa MW: 70985.1 Da PI: 6.9712 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 369 | 406 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cotton_A_39756_BGI-A2_v1.0 369 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 406 554459******************************88 PP | |||||||
2 | BELL | 121.1 | 4.7e-39 | 230 | 301 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+kkakL+++l+eV++rY+qy++q+q+v ssFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi Cotton_A_39756_BGI-A2_v1.0 230 EKQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVTSSFEQAAGIGSAKTYTALALKTISKQFRCLKDAISDQI 301 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.7E-65 | 148 | 299 | IPR006563 | POX domain |
Pfam | PF07526 | 3.8E-49 | 155 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 347 | 410 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 350 | 414 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.69E-12 | 350 | 411 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-17 | 351 | 416 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 353 | 416 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 367 | 406 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MSTYFHGNPE IQASTDGLQT LVLMNPAYVQ YSDTPPPPPA NNLLFFNPNS LSPPQTQQLV 60 GIPLPATSAA NQGPTSHDIS PLHGLVQRVH YNLYNPIDPS GSARETPRSQ QGLSLTLSSQ 120 QQPGYGSQAQ AVSGGSASSG SGVHNRVSGV QSVFLSSKYL KAAQELLDEV VNVNTTGITK 180 SELLAKKGGG GNNHSNSSSK AVGESSVVAG DGSGGGEAGE KHPAELTTAE KQEIQMKKAK 240 LINMLDEVEQ RYRQYHHQMQ IVTSSFEQAA GIGSAKTYTA LALKTISKQF RCLKDAISDQ 300 IRAANKSLGE EEDGVGGAAK IEGSRLKFVD HHLRQQRALQ QLGMIQHNAW RPQRGLPERS 360 VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEI 420 KEQEQNGTSD DKTSKTENHE DSASKSTAPS CQNPGENQKV SLMSISTAST SPLAGNAHQQ 480 SRFSLIGSSE LEGINQGSPK KPRSNELLQS PSSVPSMNMD MNQSEASNEV SMKFSKDGYS 540 FMGTNTDFMG GLGQYPIGEI GRFDAEQFAP RFPGNGVSLT LGLPHCENLS LSGTHQNFLP 600 NQTMQMGRRL DIDEPNEFGA INPPTPHSSA AYESINLQNR KRFVAQLLPD FVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 356 | 414 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 356 | 414 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017615899.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_017615900.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_017615901.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0B0NLF4 | 0.0 | A0A0B0NLF4_GOSAR; BEL1-like homeodomain protein 1 | ||||
STRING | Gorai.009G396900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-162 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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