PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39533_BGI-A2_v1.0
Common NameF383_13735
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 232aa    MW: 27093.3 Da    PI: 6.7982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39533_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-193084256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                +k+++f++eq++ Le+ Fe++ ++  +++ +LA++l+L+ rqV +WFqNrRa++k
  Cotton_A_39533_BGI-A2_v1.0 30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELELQPRQVAIWFQNRRARWK 84
                                67779*************************************************9 PP
2HD-ZIP_I/II123.88.1e-4030121192
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kkrr+s+eq++lLE+ Fe+e+kLep++K++lareL+lqprqva+WFqnrRAR+k+kq+E+dy++Lk++y++l+++ e+L+ke
  Cotton_A_39533_BGI-A2_v1.0  30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELELQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYENLESRFESLKKE 112
                                 59********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelk 92 
                                 +++L  +++
  Cotton_A_39533_BGI-A2_v1.0 113 KHSLILQIQ 121
                                 ****98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-191987IPR009057Homeodomain-like
PROSITE profilePS5007118.3342686IPR001356Homeobox domain
SMARTSM003891.4E-172990IPR001356Homeobox domain
PfamPF000468.0E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-193193IPR009057Homeodomain-like
CDDcd000866.15E-143587No hitNo description
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PfamPF021834.5E-1486127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEREYHPAAD EAIAEQAPQT PRNKKKNKMK KKRRFSDEQI RLLESIFESE TKLEPRKKMQ  60
LARELELQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYE NLESRFESLK KEKHSLILQI  120
QKFSELLEEP HKGGKGLDGS STGGGGGSEY GQTKCETEAE VQPSFQHKEC LGLQTENERG  180
DIKQTGQGGE EFLIMDEYRN DSPASPDKFY GLHSVDMFDH SYINCQWLNF WT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKKRR
27886RRARWKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641006.11e-174PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U8NA451e-172A0A1U8NA45_GOSHI; homeobox-leucine zipper protein ATHB-12-like
STRINGGorai.004G123500.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-41homeobox 12