PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39529_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 476aa    MW: 53158.9 Da    PI: 6.9481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39529_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12296341454
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Cotton_A_39529_BGI-A2_v1.0 296 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 341
                                 699***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5026194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.79E-17290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.475292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-13295346No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16296357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSHE TPPSTLQQRL QHLLESQKDW WAYAILWQTS NDDLGRLLLA  60
WGDGHFQGTN KSPKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA  120
GDGILGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSCEII  180
RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGVIAGVQEQ EHASLGFKTK  240
KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA  300
ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDRKKVK  360
TETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA  420
ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTENGFR LHEQGLKSAI LTRLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-32251948192Transcription factor MYC3
4rqw_B2e-32251948192Transcription factor MYC3
4rs9_A2e-32251948192Transcription factor MYC3
4yz6_A2e-32251948192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645163.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8JTR60.0A0A1U8JTR6_GOSHI; transcription factor MYC2-like isoform X2
STRINGGorai.004G149500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-85bHLH family protein