PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_39420_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17690.2 Da PI: 10.5144 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.9 | 1.1e-12 | 11 | 47 | 3 | 39 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 i n+s r+ t+ kR +g++KK +EL +LC+++ + ii Cotton_A_39420_BGI-A2_v1.0 11 ITNDSSRKATYKKRNKGLMKKMSELNILCGIDNCAII 47 89******************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-7 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-15 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.914 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.52E-18 | 3 | 47 | No hit | No description |
Pfam | PF00319 | 7.8E-14 | 11 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MIRKKVKLAY ITNDSSRKAT YKKRNKGLMK KMSELNILCG IDNCAIIKCV VRGLNCGDIN 60 DLNLLLDEKM SNIVKRMDAF AMTPLYTQGA LSSSSSSMVA LPPMTMVMPK AIPRTGTKGI 120 VQLDVNNMDP MKRKQWIMEL MNNNNNILKL MWEVMR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620215 | 1e-126 | JX620215.1 Gossypium hirsutum clone NBRI_GE66400 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016676364.1 | 2e-53 | PREDICTED: uncharacterized protein LOC107895624 | ||||
TrEMBL | A0A1U8IKI1 | 5e-52 | A0A1U8IKI1_GOSHI; uncharacterized protein LOC107895624 | ||||
STRING | Gorai.013G155200.1 | 3e-50 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-16 | M-type_MADS family protein |