PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_39298_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 41425.2 Da PI: 8.3784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.9e-53 | 5 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 + pGfrFhPtdeelv +yLk+kv++++ ++ e+ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+W Cotton_A_39298_BGI-A2_v1.0 5 MLPGFRFHPTDEELVGFYLKRKVQQRPPSM-EFIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFW 86 579************************999.99***************9888999**************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Cotton_A_39298_BGI-A2_v1.0 87 KATGTDRPIYSSeGNKCIGLKKSLVFYKGRATKGVKTDWMMHEFRL 132 ***********956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-58 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.956 | 5 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MEEIMLPGFR FHPTDEELVG FYLKRKVQQR PPSMEFIKQL DIYKYDPWDL PKMATTGEKE 60 WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL VFYKGRATKG 120 VKTDWMMHEF RLPSFADSAT PKIFLKKTLP PNDAWAICRI FKKTNSTAQR ALSQSRVSQV 180 PEASSSSISE VPSMLLTGKT SLNLNVDLLQ TSNGAFSSLE FVPYKPPQHS MSNGDLTSLV 240 FTPLDHTSTD SRAVDVTSML LNMLSSMLGD HYCGKATDVL HFGGDCTGTL PHEMQGNNIM 300 SGGDHESSLF KSMNVGSHGD DQWGGLRSIG FPISMPLPMN VMGDAWKPSL AWDSSCPSEM 360 STSFCSTKCY T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 7 | 170 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 7 | 170 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 7 | 170 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 7 | 170 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 7 | 170 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 7 | 170 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847236 | 0.0 | KC847236.1 Gossypium hirsutum NAC domain protein NAC59 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618860.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9ZVH0 | 1e-101 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1U8P8T7 | 0.0 | A0A1U8P8T7_GOSHI; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Gorai.013G085000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-100 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|