PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39298_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 371aa    MW: 41425.2 Da    PI: 8.3784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39298_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.9e-5351321128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 + pGfrFhPtdeelv +yLk+kv++++ ++ e+ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+W
  Cotton_A_39298_BGI-A2_v1.0   5 MLPGFRFHPTDEELVGFYLKRKVQQRPPSM-EFIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFW 86 
                                 579************************999.99***************9888999**************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Cotton_A_39298_BGI-A2_v1.0  87 KATGTDRPIYSSeGNKCIGLKKSLVFYKGRATKGVKTDWMMHEFRL 132
                                 ***********956667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-585163IPR003441NAC domain
PROSITE profilePS5100556.9565163IPR003441NAC domain
PfamPF023656.7E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEEIMLPGFR FHPTDEELVG FYLKRKVQQR PPSMEFIKQL DIYKYDPWDL PKMATTGEKE  60
WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL VFYKGRATKG  120
VKTDWMMHEF RLPSFADSAT PKIFLKKTLP PNDAWAICRI FKKTNSTAQR ALSQSRVSQV  180
PEASSSSISE VPSMLLTGKT SLNLNVDLLQ TSNGAFSSLE FVPYKPPQHS MSNGDLTSLV  240
FTPLDHTSTD SRAVDVTSML LNMLSSMLGD HYCGKATDVL HFGGDCTGTL PHEMQGNNIM  300
SGGDHESSLF KSMNVGSHGD DQWGGLRSIG FPISMPLPMN VMGDAWKPSL AWDSSCPSEM  360
STSFCSTKCY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53717019171NO APICAL MERISTEM PROTEIN
1ut4_B3e-53717019171NO APICAL MERISTEM PROTEIN
1ut7_A3e-53717019171NO APICAL MERISTEM PROTEIN
1ut7_B3e-53717019171NO APICAL MERISTEM PROTEIN
4dul_A3e-53717019171NAC domain-containing protein 19
4dul_B3e-53717019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472360.0KC847236.1 Gossypium hirsutum NAC domain protein NAC59 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618860.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVH01e-101FEZ_ARATH; Protein FEZ
TrEMBLA0A1U8P8T70.0A0A1U8P8T7_GOSHI; transcription factor JUNGBRUNNEN 1-like
STRINGGorai.013G085000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-100NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]