PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39051_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 24904.9 Da    PI: 5.4532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39051_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1860110155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + y+GVr +k++g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Cotton_A_39051_BGI-A2_v1.0  60 PVYRGVR-RKNSGKWVCEVREP---NKKSRIWLGTFLTAEMAARAHDVAAIALRG 110
                                 68****9.6779******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1260110IPR001471AP2/ERF domain
SMARTSM003801.9E-2961124IPR001471AP2/ERF domain
PROSITE profilePS5103221.86561118IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2061120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3161120IPR001471AP2/ERF domain
CDDcd000189.51E-3062120No hitNo description
PRINTSPR003672.6E-86273IPR001471AP2/ERF domain
PRINTSPR003672.6E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MELFALDCDV LDSGSVSSPL SDSGSGTSRP ANFSDEDVML ASSCPKKRAG RKKFRGTRHP  60
VYRGVRRKNS GKWVCEVREP NKKSRIWLGT FLTAEMAARA HDVAAIALRG RSACLNFADS  120
AWRLPVPVST DPKDIQKAAA EAAEAFRQPA EQWEGNSEAN AKGDEKKGSL CENGFYLDEE  180
AVFGTQTYLE NMAAGMMMSP PRCGYNGDEL EYDAADDFIP LWSYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1456117971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801930.0KP780193.1 Gossypium hirsutum C-repeat binding factor 10 (CBF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610354.11e-168PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ931e-75DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A141AX511e-155A0A141AX51_GOSHI; C-repeat binding factor 10
STRINGGorai.006G046200.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-72C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]