PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_38874_BGI-A2_v1.0 | ||||||||
Common Name | F383_28572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 46584.5 Da PI: 6.0733 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.5e-10 | 227 | 274 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_38874_BGI-A2_v1.0 227 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 274 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-17 | 221 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-10 | 221 | 278 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 223 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 223 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 227 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 229 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MNRALAETLT VLDRQRARVK WQQESYFSEL SGVFSNQTST HVHGFQGDLI SDESVLDDLV 60 MTRQVKPDPH LETSWPELGK VDMAGMGFGP CGYSNGPSFD MNYAISRTFS CPPAVAATIA 120 KEATEVKGKE SIVCENMGSA VARESSKKRK ADKLHNLKVA ADDDSKKTKA CGEEGEESKI 180 TRPPNTNKSS TKQEPSADTS KENSKLTEVQ KPDYIHVRAR RGQATDSHSL AERVRREKIS 240 ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFDIDNLFA 300 KDVFPPCMTN FPTVGISSEM ANPSYLHFNP VQQVVACSGV EMGLNSPDIA LRRTISAPES 360 TILDASFLDT SCFTQIQPSP TWDVELQNVY NVAFEHGRST TPFPSQPFAG SIEASHLKME 420 M |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635200.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X2 | ||||
Swissprot | Q8GY61 | 3e-66 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A0B0MUS1 | 0.0 | A0A0B0MUS1_GOSAR; Transcription factor bHLH63-like protein | ||||
STRING | Gorai.008G029300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5947 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-68 | cryptochrome-interacting basic-helix-loop-helix 1 |