PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_38823_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21213.9 Da PI: 5.7643 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.2e-20 | 58 | 110 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd +++ r +lg+f+taeeAa+a+++a+ +++g+ Cotton_A_38823_BGI-A2_v1.0 58 RYRGVRRRP-WGKYAAEIRDsTRQG--GPRLWLGTFDTAEEAARAYDRAAFSMRGH 110 69*******.**********44334..4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.248 | 58 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-29 | 58 | 118 | No hit | No description |
SMART | SM00380 | 1.3E-31 | 58 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-15 | 58 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 58 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 58 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-11 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MIVDLFWMFL LVYMGGQLCA FATEYKCGTE FDALFQVQTM PMEQNKMKKA GVAESSVRYR 60 GVRRRPWGKY AAEIRDSTRQ GGPRLWLGTF DTAEEAARAY DRAAFSMRGH SAILNFRDEH 120 IISSTTVNSP PSATPSSSSS SSSSSASAAS SSSYFFEHVK SKKDDERIVL ELECLDDKLL 180 EELLDFENK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-29 | 51 | 124 | 7 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394934 | 1e-108 | GQ394934.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1957 SSR marker DPL0287 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016747775.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 4e-35 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1U8P9F0 | 1e-105 | A0A1U8P9F0_GOSHI; ethylene-responsive transcription factor ERF096-like | ||||
STRING | Gorai.001G176600.1 | 6e-74 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25048 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 2e-21 | ERF family protein |
Publications ? help Back to Top | |||
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