PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38798_BGI-A2_v1.0

Common Name

F383_25253

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 739aa MW: 81647.2 Da PI: 6.7521

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38798_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++++++q++eLe++F+++++p +++r+eL+++lgL+ +q+k+WFqNrR+++k Cotton_A_38798_BGI-A2_v1.0 57 KFHRHNPHQIHELESFFKECPHPEEKQRRELSRRLGLESKQIKFWFQNRRTQMK 110 556899*********************************************999 PP
2	START	167.6	8.3e-53	260	479	2	203
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 +a++a++el+k+a+ ++p+W k e +n +e+ ++f++ + +++ea r++++v+ lv +l+d + +W e+ Cotton_A_38798_BGI-A2_v1.0 260 VALAAMDELIKMAQMGSPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-CWAEM 341 7899*****************9999999999999999977555999*************************.* PP -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147 ++ +a t++v+ssg +alqlm ae+q+lsplvp R + f+R+++q+++ +w+ivdvS++ + + ++ +++ Cotton_A_38798_BGI-A2_v1.0 342 FPcmisRAVTIDVLSSGkgvtrhNALQLMEAEFQVLSPLVPiRQVQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFANCRR 423 *******************************************************************99.9**** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 lpSg++i++++n +skvtwveh +++++++h llr+l++sg +gak+w atl+rq Cotton_A_38798_BGI-A2_v1.0 424 LPSGCVIQDMDNKYSKVTWVEHSEYDESTVHHLLRPLLGSGFGFGAKRWIATLRRQ 479 ***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-19	41	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.68E-20	41	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	52	112	IPR001356	Homeobox domain
SMART	SM00389	2.1E-16	53	116	IPR001356	Homeobox domain
Pfam	PF00046	5.6E-17	57	110	IPR001356	Homeobox domain
CDD	cd00086	1.86E-17	59	112	No hit	No description
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.198	250	485	IPR002913	START domain
SuperFamily	SSF55961	3.3E-29	251	480	No hit	No description
CDD	cd08875	1.03E-108	254	479	No hit	No description
SMART	SM00234	4.2E-33	259	482	IPR002913	START domain
Pfam	PF01852	1.3E-44	260	479	IPR002913	START domain
SuperFamily	SSF55961	2.47E-15	522	733	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MASHGELRLI GENYDPGFIG MMKEDDGYGS SDDFEGALGN DQDTADNGRP PRKKKKKFHR 60 HNPHQIHELE SFFKECPHPE EKQRRELSRR LGLESKQIKF WFQNRRTQMK TQLERHENVI 120 LKQENDKLRA ENDLLRQAIA SAICNNCGVP AVPDEISYEP SQLMMENSRL KDELNRARAL 180 TNKFLGRHLS SSSANPSPSP SQGLNSNVEV VVRRTGFCGL NNGSTSLPMG FEFGHGATMP 240 LMNPSFAYEM PYDKSALVDV ALAAMDELIK MAQMGSPLWI KGFGDGMETL NLEEYKRTFS 300 SFIGMKPSGF TTEATRETAM VPLRGLALVD TLMDANCWAE MFPCMISRAV TIDVLSSGKG 360 VTRHNALQLM EAEFQVLSPL VPIRQVQFIR FCKQHSDSVW AIVDVSINLS NAANALMFAN 420 CRRLPSGCVI QDMDNKYSKV TWVEHSEYDE STVHHLLRPL LGSGFGFGAK RWIATLRRQY 480 SSLALLMSPD IHGEDINTVG KKSMLKLAQR MAYNFSAGIG ASSVNKWDKL NVGNVGEDVR 540 VMTRKNVNDP GEPLGIVLSA ATSVWMPITQ QTLFNLLRNE RMRNQWDILS SGRPMQAMYS 600 VAKGPGQGNC VSILRGAAVN GSDTNMLILQ ETWSDDCGAL IVYAPVDASS IRVVMNGGDS 660 SHVALLPSGF AILPGVQTDG PSMQPDIDEN TSDGCILTVG FQILVNSVPT AKLTVESVET 720 VNHLLTCTVE KIKAALSVT

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MASHGELRLI GENYDPGFIG MMKEDDGYGS SDDFEGALGN DQDTADNGRP PRKKKKKFHR  60
HNPHQIHELE SFFKECPHPE EKQRRELSRR LGLESKQIKF WFQNRRTQMK TQLERHENVI  120
LKQENDKLRA ENDLLRQAIA SAICNNCGVP AVPDEISYEP SQLMMENSRL KDELNRARAL  180
TNKFLGRHLS SSSANPSPSP SQGLNSNVEV VVRRTGFCGL NNGSTSLPMG FEFGHGATMP  240
LMNPSFAYEM PYDKSALVDV ALAAMDELIK MAQMGSPLWI KGFGDGMETL NLEEYKRTFS  300
SFIGMKPSGF TTEATRETAM VPLRGLALVD TLMDANCWAE MFPCMISRAV TIDVLSSGKG  360
VTRHNALQLM EAEFQVLSPL VPIRQVQFIR FCKQHSDSVW AIVDVSINLS NAANALMFAN  420
CRRLPSGCVI QDMDNKYSKV TWVEHSEYDE STVHHLLRPL LGSGFGFGAK RWIATLRRQY  480
SSLALLMSPD IHGEDINTVG KKSMLKLAQR MAYNFSAGIG ASSVNKWDKL NVGNVGEDVR  540
VMTRKNVNDP GEPLGIVLSA ATSVWMPITQ QTLFNLLRNE RMRNQWDILS SGRPMQAMYS  600
VAKGPGQGNC VSILRGAAVN GSDTNMLILQ ETWSDDCGAL IVYAPVDASS IRVVMNGGDS  660
SHVALLPSGF AILPGVQTDG PSMQPDIDEN TSDGCILTVG FQILVNSVPT AKLTVESVET  720
VNHLLTCTVE KIKAALSVT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY338495	0.0	AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631789.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_017631791.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Refseq	XP_017631792.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Refseq	XP_017631793.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0B0P3V7	0.0	A0A0B0P3V7_GOSAR; Homeobox-leucine zipper ANTHOCYANINLESS 2-like protein
STRING	Gorai.006G047300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]