PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38770_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 354aa    MW: 39717.7 Da    PI: 9.867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38770_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-54281551128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat+sgyW
  Cotton_A_38770_BGI-A2_v1.0  28 LPPGFRFHPTDEELVVHYLKRKVASVPLPV-TIIAEVDLYKFDPWELPNKASFGEQEWYFFSPRDRKYPNGARPNRATTSGYW 109
                                 79****************************.89***************999999***************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk+++++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Cotton_A_38770_BGI-A2_v1.0 110 KATGTDKPIITSnGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 155
                                 ********999867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6524189IPR003441NAC domain
PROSITE profilePS5100562.95228189IPR003441NAC domain
PfamPF023658.0E-2929155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKNYKENVKY CKLMESTDPS STSPHPQLPP GFRFHPTDEE LVVHYLKRKV ASVPLPVTII  60
AEVDLYKFDP WELPNKASFG EQEWYFFSPR DRKYPNGARP NRATTSGYWK ATGTDKPIIT  120
SNGNQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLIDSNS NSKAQIVDLP NRRASLRLDD  180
WVLCRIYKKN NSQRLMEKDK NHSALPSFSH QNHGSLLEHE ENCYKRILTG DSMQNSSISQ  240
TAVSSSSKQS LPMAFLSATT TNSIPVKQAI AGPQYWNNEP NSTGSQSGKP RFHGDLNSIS  300
IASPDIDDTN SSFVSLLSHQ LPQNAPFNTS TIVGSLVNGV SRQQFILHGM NWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-77141926168NO APICAL MERISTEM PROTEIN
1ut4_B2e-77141926168NO APICAL MERISTEM PROTEIN
1ut7_A2e-77141926168NO APICAL MERISTEM PROTEIN
1ut7_B2e-77141926168NO APICAL MERISTEM PROTEIN
4dul_A2e-77141926168NAC domain-containing protein 19
4dul_B2e-77141926168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755539.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY421e-106NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1U8PZ360.0A0A1U8PZ36_GOSHI; NAC transcription factor 25-like
STRINGEOY283340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-107NAC domain containing protein 25