PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38604_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 185aa    MW: 20458.3 Da    PI: 8.4956
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38604_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY158.46.1e-4991631163
                       YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk 83 
                                 +d++ +se++Cyv+CnfCnt+lav +P + l+++vtv+CGhC++l  ++ +   q +    + + +l+       +v+e++  
  Cotton_A_38604_BGI-A2_v1.0   9 MDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLETVTVKCGHCSNLSFLSTRPPLQGQCLDPQTSLTLQ-----FVHVKEMQSF 86 
                                 578899**************************************977666655555444444222222.....2222222222 PP

                       YABBY  84 snvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                                   + ++    t+ +s + s++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  Cotton_A_38604_BGI-A2_v1.0  87 CGDFRK---GTQFPSPSSSTSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 163
                                 222333...33344444477888999****************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-5614163IPR006780YABBY protein
SuperFamilySSF470958.38E-9107161IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5117162IPR009071High mobility group box domain
CDDcd013904.00E-6124160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNLEDKVGMD LVPQSEHLCY VRCNFCNTVL AVGIPCKRLL ETVTVKCGHC SNLSFLSTRP  60
PLQGQCLDPQ TSLTLQFVHV KEMQSFCGDF RKGTQFPSPS SSTSSEPSSP KAPFVVKPPE  120
KKHRLPSAYN RFMKEEIQRI KAANPEIPHR EAFSAAAKNW ARYIPNSPAA SSVCGSSSNE  180
QNDNV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8548041e-170AY854804.1 Gossypium hirsutum isolate 1 CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481220.11e-118PREDICTED: protein CRABS CLAW isoform X1
SwissprotQ8L9252e-70CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A0D2NCW11e-114A0A0D2NCW1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MPS51e-114A0A1U8MPS5_GOSHI; protein CRABS CLAW-like isoform X2
STRINGGorai.005G146700.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97252835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.17e-70YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]