PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38579_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 314aa    MW: 35242.2 Da    PI: 5.9843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38579_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-175199355
                         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+ +++g
  Cotton_A_38579_BGI-A2_v1.0 51 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAAISMKG 99
                                56******.**********965...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.3150107IPR001471AP2/ERF domain
SMARTSM003801.8E-3250113IPR001471AP2/ERF domain
CDDcd000182.97E-2950106No hitNo description
SuperFamilySSF541719.15E-2051107IPR016177DNA-binding domain
PRINTSPR003672.0E-75162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2751106IPR001471AP2/ERF domain
PfamPF008471.5E-105399IPR001471AP2/ERF domain
PRINTSPR003672.0E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPTSMDKGYG YEPLPQAHHL ASTFMMLQRN KSSYQSGERR GRRKAAEPGR FLGVRRRPWG  60
RYAAEIRDPT TKERHWLGTF DTAHEAALAY DRAAISMKGT QARTNFVYFD HNNNTAFHSI  120
MSPSDVQSAV LPTPYHFLDL TTPQSRPKQA SNHSFEAPQP DISHSETKTL TQPNNTKSPI  180
PLSSADNGFF FTDNDDNSGY LACIVPYNCL KPPSNKSIDN QSQALPKSND IIEFPGFNEL  240
DQQGNFMRDQ QPWEINSFEL EAIFNHPPLI VGDECTGAFY PSSYDMIPQP ISSVDTCCFP  300
LPSFGDVVDL GYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2041106571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648685.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A2P5W1W10.0A0A2P5W1W1_GOSBA; Uncharacterized protein
STRINGGorai.011G188200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-50ERF family protein