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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_38462_BGI-A2_v1.0 |
| Common Name | F383_14599 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 336aa MW: 37140 Da PI: 10.0077 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_38462_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 389.9 | 3.7e-119 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd g+re r k+ +y+ a +++ +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ er
Cotton_A_38462_BGI-A2_v1.0 1 MDDGGHREngRLKAdQYRTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAER 83
99***999999999999955443345556667*************************************************** PP
GAGA_bind 78 dnkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrq 154
dn++++l+++ensla s++p+g ++++g+k++++ qq +++ p++++ +++ re++ +++lp++ ++ea ++++ k+ +
Cotton_A_38462_BGI-A2_v1.0 84 DNAIANLQYRENSLAsgniSSCPPGFHISRGVKHMQHPQQnVHHlPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAK 166
*************9999999********************76779********************998888887777777666 PP
GAGA_bind 155 rakkpkekkak.kkkkksekskkkvkkesader.........................skaekksidlvlngvslDestlPvP 211
+ak+ ++k+ k+ kk ++++++++k + +k+++k dl+ln+v +D+st+ +P
Cotton_A_38462_BGI-A2_v1.0 167 EAKVIASNKKAtKPPKKVKQENEDSDKLM---SgkshewkggqdvggagddlnkqlvtTKSDWKGKDLGLNQVVFDDSTMAPP 246
66654433332244444444444333333...13346799******************************************* PP
GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
vCsCtG+lrqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL +LaaeGydlsnpvDLk+hWAkHGt
Cotton_A_38462_BGI-A2_v1.0 247 VCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGT 329
*********************************************************************************** PP
GAGA_bind 295 nkfvtir 301
n+++ti+
Cotton_A_38462_BGI-A2_v1.0 330 NRYITIK 336
******8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RLKADQYRTA QGQWLMHQPS MKQIMAIMAE RDAAIQERNL ALSEKKAAIA 60
ERDMAFLQRD AAIAERNNAI AERDNAIANL QYRENSLASG NISSCPPGFH ISRGVKHMQH 120
PQQNVHHLPH ISEVPYNSRE MHASDVLPVT PGTSEAAKSR QGKRAKEAKV IASNKKATKP 180
PKKVKQENED SDKLMSGKSH EWKGGQDVGG AGDDLNKQLV TTKSDWKGKD LGLNQVVFDD 240
STMAPPVCSC TGVLRQCYKW GNGGWQSSCC TTSLSMYPLP AVPNKRHARI GGRKMSGSAF 300
NKLLTRLAAE GYDLSNPVDL KHHWAKHGTN RYITIK
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 174 | 182 | KKATKPPKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
