PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38457_BGI-A2_v1.0

Common Name

F383_12684

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 31271.9 Da PI: 6.2439

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38457_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	6e-18	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Cotton_A_38457_BGI-A2_v1.0 67 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 120 456899***********************************************9 PP
2	HD-ZIP_I/II	131.7	2.8e-42	66	158	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L+++ Cotton_A_38457_BGI-A2_v1.0 66 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQ 148 69******************************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 +++L++e+++ Cotton_A_38457_BGI-A2_v1.0 149 NQKLHAEIMT 158 ***99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.54E-19	57	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	62	122	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	65	126	IPR001356	Homeobox domain
CDD	cd00086	9.41E-16	67	123	No hit	No description
Pfam	PF00046	2.6E-15	67	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-19	69	129	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.8E-17	122	162	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLQSPHEEDH QPSTSINQML PSCPPQDFHG VASFLGKRSM SFSGIDVCEE ANGEDDLSDD 60 GSQAGEKKRR LNMEQVKTLE KNFELGNKLE PERKMQLARA LGLQPRQIAI WFQNRRARWK 120 TKQLEKDYDL LKRQYEAIKA DNDALQAQNQ KLHAEIMTLK SREPTESINL NKETEGSCSN 180 RSENSSDVKL DISRTPAIDS PLSTHPTSRT FFPTSIRPTG GAAQLFQTSS SRPDHHHPCQ 240 KMDQMVKEES LSNMFCTIED QTGFWPWLEQ PHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620404.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	1e-111	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0B0NFT0	0.0	A0A0B0NFT0_GOSAR; Homeobox-leucine zipper ATHB-13-like protein
TrEMBL	A0A2P5WWR7	0.0	A0A2P5WWR7_GOSBA; Uncharacterized protein
STRING	Gorai.005G139600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-114	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]