PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_38441_BGI-A2_v1.0 | ||||||||
Common Name | F383_27269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24257.9 Da PI: 9.0294 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.6 | 7.2e-27 | 2 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C+vlr++ +++C+++p++ p++q++++ +++k++G + +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg Cotton_A_38441_BGI-A2_v1.0 2 SCNGCRVLRKGYSQNCIIRPCLqwiksPDSQANATLFLAKFYGLAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVG 84 6********************************************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 ++++ ++ +q++++++l +++ Cotton_A_38441_BGI-A2_v1.0 85 MLWSRNWVECQAAVDAVLKGSQ 106 *************999988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.52 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-21 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MSCNGCRVLR KGYSQNCIIR PCLQWIKSPD SQANATLFLA KFYGLAGLLN LIEAGPENLR 60 PAIFMSLLYE ACGRVVNPVY GSVGMLWSRN WVECQAAVDA VLKGSQITET SSSESLTQQS 120 ISPLKTYDIR HVFKDPNTTD IDKVKSRNSF KRSATKSKRH VDSKEDESMF SVETQEGSLV 180 TQTKKGPLLK LGNQTVEIAD IRLELTLGLA PATMQLPRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX585561 | 7e-74 | JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610210.1 | 1e-163 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 3e-72 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A0B0MSE1 | 1e-160 | A0A0B0MSE1_GOSAR; LOB domain-containing 41-like protein | ||||
STRING | Gorai.002G217800.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-68 | LOB domain-containing protein 41 |