PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_38266_BGI-A2_v1.0 | ||||||||
Common Name | F383_20945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 441aa MW: 50516.5 Da PI: 4.9401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.6 | 1.1e-35 | 11 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 +G+rFhPtd+elv++yL +k+ +++ + ++ikev +++ +Pw+Lp +++++ ++ wyfFs+r + kr +r+t++g+ Cotton_A_38266_BGI-A2_v1.0 11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSEIQSADQVWYFFSRRGDN----KRVKRTTDKGF 88 7***********************9777.88****5599********6559999999*******9875....69********* PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk tgk ++v+ ++ kk+Lvfy+gr+p+++ t Wv+hey++ Cotton_A_38266_BGI-A2_v1.0 89 WKVTGKPRKVKG--KKGCAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132 **********87..66799*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-38 | 8 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.446 | 9 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-21 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MSNIDDNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSE 60 IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGCAAKKSL VFYEGRTPNA 120 KWTPWVIHEY TFTSTLLDNR EGIFLCKLKK KEDETANASS SESCQPSLVA DEEIPDNSTM 180 FNPDEMLDSL KERDREHELE MDEQQQPSCL EFTHLPDFTS YCDGLPHLSK EENDDESWIR 240 YLVDDDEINP DELNLGNECR NFALVDTSVT CPGEPSRKRL RREAGVLCGA IENEECQPML 300 YEQAVSNSMM LDEHGGSKKH QALAMVNAPN VTSSSVKQDP HGRDRMVSLN NESREMDIPD 360 VESVVDPHSI VRASRFHNPY YKKLGEQEDD PKRINKRGKF CRKIAFQDEA IDVKQHATAV 420 NLPIIMESTG EDLVLPSQLA A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-20 | 12 | 154 | 18 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 390 | 396 | PKRINKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626879.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like isoform X2 | ||||
TrEMBL | A0A0B0NXD5 | 0.0 | A0A0B0NXD5_GOSAR; NAC domain-containing 69-like protein | ||||
STRING | Gorai.004G149000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20817 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 2e-32 | NAC domain containing protein 69 |