PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38266_BGI-A2_v1.0
Common NameF383_20945
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 441aa    MW: 50516.5 Da    PI: 4.9401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38266_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61.1e-35111323128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 +G+rFhPtd+elv++yL +k+ +++  + ++ikev  +++ +Pw+Lp  +++++ ++ wyfFs+r  +    kr +r+t++g+
  Cotton_A_38266_BGI-A2_v1.0  11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSEIQSADQVWYFFSRRGDN----KRVKRTTDKGF 88 
                                 7***********************9777.88****5599********6559999999*******9875....69********* PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wk tgk ++v+   ++    kk+Lvfy+gr+p+++ t Wv+hey++
  Cotton_A_38266_BGI-A2_v1.0  89 WKVTGKPRKVKG--KKGCAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132
                                 **********87..66799*************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-388151IPR003441NAC domain
PROSITE profilePS5100540.4469151IPR003441NAC domain
PfamPF023651.3E-2111131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSNIDDNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSE  60
IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGCAAKKSL VFYEGRTPNA  120
KWTPWVIHEY TFTSTLLDNR EGIFLCKLKK KEDETANASS SESCQPSLVA DEEIPDNSTM  180
FNPDEMLDSL KERDREHELE MDEQQQPSCL EFTHLPDFTS YCDGLPHLSK EENDDESWIR  240
YLVDDDEINP DELNLGNECR NFALVDTSVT CPGEPSRKRL RREAGVLCGA IENEECQPML  300
YEQAVSNSMM LDEHGGSKKH QALAMVNAPN VTSSSVKQDP HGRDRMVSLN NESREMDIPD  360
VESVVDPHSI VRASRFHNPY YKKLGEQEDD PKRINKRGKF CRKIAFQDEA IDVKQHATAV  420
NLPIIMESTG EDLVLPSQLA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-201215418171Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390396PKRINKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626879.10.0PREDICTED: NAC domain-containing protein 76-like isoform X2
TrEMBLA0A0B0NXD50.0A0A0B0NXD5_GOSAR; NAC domain-containing 69-like protein
STRINGGorai.004G149000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2081746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-32NAC domain containing protein 69