PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38038_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 227aa MW: 24981.8 Da PI: 4.7885

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38038_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	54	103	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Cotton_A_38038_BGI-A2_v1.0 54 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 103 69**998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.9E-13	53	103	IPR001471	AP2/ERF domain
CDD	cd00018	2.30E-32	53	113	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-31	54	112	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-21	54	112	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.893	54	111	IPR001471	AP2/ERF domain
SMART	SM00380	8.5E-36	54	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	55	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	77	93	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAETNLSSSE FESCSSHNHS SNSPASSSSS STSNGESMED NSKAKRSSIS KHPIYRGVRM 60 RSWGKWVSEI REPRKKSRIW LGTFATPEMA ARAHDVAALS IKGDSAILNF PHLAILLPRP 120 VSLMPRDVQV AAAKAASMVN FNTLPSSSSY LFEPNASEQA EELSEIVQLP NIECSFQSLF 180 DSQGDFVPVD SVDGWVYPPQ DLYGGFCDQV WSCENLIPAN FEPSLWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-20	46	112	6	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622628.1	1e-167	PREDICTED: ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	1e-54	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1U8ILE5	1e-135	A0A1U8ILE5_GOSHI; ethylene-responsive transcription factor TINY-like
STRING	Gorai.003G063500.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	1e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]