PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38005_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 26662.8 Da    PI: 4.7385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38005_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-194190255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                 ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Cotton_A_38005_BGI-A2_v1.0 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 90
                                69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.30E-2240100No hitNo description
PROSITE profilePS5103222.5634198IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-214198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-304199IPR001471AP2/ERF domain
SMARTSM003802.7E-3641104IPR001471AP2/ERF domain
PfamPF008474.5E-144190IPR001471AP2/ERF domain
PRINTSPR003677.3E-104253IPR001471AP2/ERF domain
PRINTSPR003677.3E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTSMTGGGF GERKQARKPA QASSRKGCMR GKGGPENALC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FDTSHEAAMA YDAAARKLYG SDAKLNLPEL CANNPQSQPS SAANPQMAPM  120
VNYQPQNVSN SGMSMISSSS NNPTIRVNDM TPITVYNNDS SVTPSFPIEN IDLQGNVDAK  180
FGQITEDGIE GFWENMNANL PLLDDSIWAE TAMSLEFPMM GDPGSFASNL MEATGWDALQ  240
SPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-184298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640873.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
TrEMBLA0A1U8HLQ91e-172A0A1U8HLQ9_GOSHI; dehydration-responsive element-binding protein 2D-like isoform X1
STRINGGorai.005G110100.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-55ERF family protein