PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37899_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 357aa    MW: 41465.8 Da    PI: 6.2613
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37899_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.3e-35421342103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++         weF+++
  Cotton_A_37899_BGI-A2_v1.0  42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANE 115
                                 9********************999******************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                 +F +g++ ll++i+r+k++
  Cotton_A_37899_BGI-A2_v1.0 116 KFLRGQRPLLKNIRRRKTH 134
                                 ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.9E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3438131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3042131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-184265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS  60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFANEKFLRG  120
QRPLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ  180
NTRTCLLAVE KRLRKTEMKQ QQIMSFLAKA MQNPSFVQQL IQHNDRSKEL EEAITKKRQR  240
RIDQRSMDVE TSELLGAKTE PKCYDVAEFE VTELDKLVMN LQRLTGSQNH IELEHVEESK  300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YLDVLVEQLR YLGSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-243713312122Heat shock factor protein 1
5d5u_B2e-243313317131Heat shock factor protein 1
5d5v_B2e-243313317131Heat shock factor protein 1
5d5v_D2e-243313317131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674170.0KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610495.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P5YVG30.0A0A2P5YVG3_GOSBA; Uncharacterized protein
STRINGGorai.011G168400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122heat shock transcription factor A6B