PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37851_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 168aa    MW: 19316.4 Da    PI: 6.0262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37851_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2067116255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrdp   + r +r++lg+f+tae Aa+a+++a+ +++g
  Cotton_A_37851_BGI-A2_v1.0  67 RYRGVRQRP-WGKWAAEIRDP---N-RaARVWLGTFDTAEAAARAYDRAAIRFRG 116
                                 8********.**********8...3.47************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-1966126No hitNo description
PfamPF008479.7E-1567116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3367125IPR001471AP2/ERF domain
PROSITE profilePS5103225.42267124IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2367126IPR016177DNA-binding domain
SMARTSM003808.5E-3967130IPR001471AP2/ERF domain
PRINTSPR003672.7E-126879IPR001471AP2/ERF domain
PRINTSPR003672.7E-1290106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDNYNRNQSR ALTLTREQEY DIMVSTLLHV INGGQSGTSN NGFCFNSLFP PIQPARVPLP  60
TTTNRKRYRG VRQRPWGKWA AEIRDPNRAA RVWLGTFDTA EAAARAYDRA AIRFRGDKAK  120
INFPLSDYEM RGEEEKQSGE EGESSNDNEN GWKIFSEEEF RELMMVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2466125464ATERF1
3gcc_A2e-2466125464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636517.11e-123PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-33EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8LDJ11e-119A0A1U8LDJ1_GOSHI; ethylene-responsive transcription factor ERF114-like
STRINGGorai.008G075600.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]