PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_37659_BGI-A2_v1.0

Common Name

F383_14540, F383_16809

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 306aa MW: 34249.4 Da PI: 8.6595

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_37659_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.1	4.3e-33	57	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+Ptd+e++ e+L++kv +k ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+ Cotton_A_37659_BGI-A2_v1.0 57 LPAGVKFDPTDQEIL-EHLEAKVILDKynlhplIDEFIPtLEGEnGICYTHPERLP-GVSKDGQIRHFFHRPSKAYTTGTRKR 137 799*********9.999999888885665442222222333336******.555666777*************** PP NAM 76 ratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+++ + +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Cotton_A_37659_BGI-A2_v1.0 138 RKVHtgdedgsETRWHKTGKTRPVLV-GGTVKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 198 8443455444678*********.99********6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-39	51	217	IPR003441	NAC domain
PROSITE profile	PS51005	34.054	57	217	IPR003441	NAC domain
Pfam	PF02365	5.2E-15	58	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTWCNNTVDD RALHIATKEP IVSVATSAAA ASTISCPSCG HNIPYQDQAG IHDLPGLPAG 60 VKFDPTDQEI LEHLEAKVIL DKYNLHPLID EFIPTLEGEN GICYTHPERL PGVSKDGQIR 120 HFFHRPSKAY TTGTRKRRKV HTGDEDGSET RWHKTGKTRP VLVGGTVKGY KKILVLYTNY 180 GRQKKPEKTN WVMHQYHLGN NEDEKDGELV VSKVFYQTQP RQCGTSSSIK EPLNRKSKNI 240 IQTPNSSSGG VVEYYNQPFI SFDHGHGSHH YRENPPQIIP NFGVQGDESS FYRLASDTSK 300 GKGRSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847233	0.0	KC847233.1 Gossypium hirsutum NAC domain protein NAC56 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605089.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-121	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0B0NIW6	0.0	A0A0B0NIW6_GOSAR; NAC domain-containing 8-like protein
STRING	Gorai.010G157600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-116	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]