PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_37650_BGI-A2_v1.0

Common Name

F383_30387

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 431aa MW: 47737.4 Da PI: 6.8791

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_37650_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	59.1	1.8e-18	40	95	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++h kv+gRdRR+R++++c +F L++e G+ +++ ti+WLlqq p Cotton_A_37650_BGI-A2_v1.0 40 KRRRYKGDRHIKVEGRDRRIRIPLTCCSGLFRLTREMGHRTNGGTIQWLLQQTRPD 95 4666788*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	14.667	45	99	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-15	45	94	IPR005333	Transcription factor, TCP
SuperFamily	SSF56317	1.57E-51	120	402	IPR003010	Carbon-nitrogen hydrolase
Gene3D	G3DSA:3.60.110.10	2.5E-54	120	397	IPR003010	Carbon-nitrogen hydrolase
PROSITE profile	PS50263	30.998	121	431	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	3.3E-44	122	394	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	153	168	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MDSQTQSVDQ QQQEEENEQR SFLPENAEEG GPTSLQQSKK RRRYKGDRHI KVEGRDRRIR 60 IPLTCCSGLF RLTREMGHRT NGGTIQWLLQ QTRPDLVPPD PITHPTLLFA SAPAYMEKGR 120 VRATVVQAST VFFDTPATLD KAERLIAGSA AYGSQLVVFP EAFVGGYPRG CPFESPNEDN 180 QQLPKYHASA IEVAGPGVDR LAKISCRYKV HLVMGVVEKD GFYLFSTILF FDLVGQYLGK 240 HRKLMRSASE CVVWCSGEKS SLPLYRTAIG KVGGLLYLDN RILSLRTELY AKGIQMYCAP 300 TADAREEWRA SMIHIAIEGR CFVLSANQFC CRKDHSLPLK CIDGDSNGDL LDTIVCSGGS 360 VIVSPSGTIL AGANYQGESL ISADLDLEET TPAKLEFGEV GTWYGTGFCW LVCKLTQPCS 420 LSNCCEDSSF R

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MDSQTQSVDQ QQQEEENEQR SFLPENAEEG GPTSLQQSKK RRRYKGDRHI KVEGRDRRIR  60
IPLTCCSGLF RLTREMGHRT NGGTIQWLLQ QTRPDLVPPD PITHPTLLFA SAPAYMEKGR  120
VRATVVQAST VFFDTPATLD KAERLIAGSA AYGSQLVVFP EAFVGGYPRG CPFESPNEDN  180
QQLPKYHASA IEVAGPGVDR LAKISCRYKV HLVMGVVEKD GFYLFSTILF FDLVGQYLGK  240
HRKLMRSASE CVVWCSGEKS SLPLYRTAIG KVGGLLYLDN RILSLRTELY AKGIQMYCAP  300
TADAREEWRA SMIHIAIEGR CFVLSANQFC CRKDHSLPLK CIDGDSNGDL LDTIVCSGGS  360
VIVSPSGTIL AGANYQGESL ISADLDLEET TPAKLEFGEV GTWYGTGFCW LVCKLTQPCS  420
LSNCCEDSSF R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	9e-24	120	403	15	298	Nitrilase
3wuy_B	9e-24	120	403	15	298	Nitrilase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613338.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X3
Swissprot	Q42966	1e-119	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A0B0N152	0.0	A0A0B0N152_GOSAR; Bifunctional nitrilase/nitrile hydratase NIT4B
STRING	Gorai.009G398700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20587	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-17	TCP family protein

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]