PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_37650_BGI-A2_v1.0 | ||||||||
Common Name | F383_30387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 431aa MW: 47737.4 Da PI: 6.8791 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 59.1 | 1.8e-18 | 40 | 95 | 3 | 58 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++h kv+gRdRR+R++++c +F L++e G+ +++ ti+WLlqq p Cotton_A_37650_BGI-A2_v1.0 40 KRRRYKGDRHIKVEGRDRRIRIPLTCCSGLFRLTREMGHRTNGGTIQWLLQQTRPD 95 4666788*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 14.667 | 45 | 99 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-15 | 45 | 94 | IPR005333 | Transcription factor, TCP |
SuperFamily | SSF56317 | 1.57E-51 | 120 | 402 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 2.5E-54 | 120 | 397 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 30.998 | 121 | 431 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 3.3E-44 | 122 | 394 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE pattern | PS00920 | 0 | 153 | 168 | IPR000132 | Nitrilase/cyanide hydratase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MDSQTQSVDQ QQQEEENEQR SFLPENAEEG GPTSLQQSKK RRRYKGDRHI KVEGRDRRIR 60 IPLTCCSGLF RLTREMGHRT NGGTIQWLLQ QTRPDLVPPD PITHPTLLFA SAPAYMEKGR 120 VRATVVQAST VFFDTPATLD KAERLIAGSA AYGSQLVVFP EAFVGGYPRG CPFESPNEDN 180 QQLPKYHASA IEVAGPGVDR LAKISCRYKV HLVMGVVEKD GFYLFSTILF FDLVGQYLGK 240 HRKLMRSASE CVVWCSGEKS SLPLYRTAIG KVGGLLYLDN RILSLRTELY AKGIQMYCAP 300 TADAREEWRA SMIHIAIEGR CFVLSANQFC CRKDHSLPLK CIDGDSNGDL LDTIVCSGGS 360 VIVSPSGTIL AGANYQGESL ISADLDLEET TPAKLEFGEV GTWYGTGFCW LVCKLTQPCS 420 LSNCCEDSSF R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 9e-24 | 120 | 403 | 15 | 298 | Nitrilase |
3wuy_B | 9e-24 | 120 | 403 | 15 | 298 | Nitrilase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613338.1 | 0.0 | PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X3 | ||||
Swissprot | Q42966 | 1e-119 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A0B0N152 | 0.0 | A0A0B0N152_GOSAR; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
STRING | Gorai.009G398700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20587 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-17 | TCP family protein |
Publications ? help Back to Top | |||
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