PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37610_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 291aa    MW: 33554.9 Da    PI: 8.7915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37610_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.6e-50151461128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 
                                 l pGfrFhPtdeelv +yL++kve+k +++ ++ik+vdiyk++PwdLpk  k+++ +ekewyfF++r +ky+++ r+nr+t s
  Cotton_A_37610_BGI-A2_v1.0  15 LLPGFRFHPTDEELVGFYLRRKVEKKLFSI-DIIKHVDIYKHDPWDLPKvsKLSSgTEKEWYFFCRRGRKYRNSIRPNRVTGS 96 
                                 579***************************.99***************54544333677************************ PP

                         NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 g+Wkatg dk+++s    +  +glkk+Lv+ykg+a kg+ktdW+mhe+rl
  Cotton_A_37610_BGI-A2_v1.0  97 GFWKATGIDKPIYSVggFHDCIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 146
                                 **************9443455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-558176IPR003441NAC domain
PROSITE profilePS5100553.62515176IPR003441NAC domain
PfamPF023657.0E-2617146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEVMEKMISE DEDVLLPGFR FHPTDEELVG FYLRRKVEKK LFSIDIIKHV DIYKHDPWDL  60
PKVSKLSSGT EKEWYFFCRR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS VGGFHDCIGL  120
KKSLVYYKGS AGKGTKTDWM MHEFRLPPPS TTTLSSTNKD NLPEAEVWTL CRIFKRDVSS  180
RKFASDWQNK KNKQNTNTSA SSSRACSVES ENSLKVENFG VLDDKGIERK LQNDHFLGGN  240
QLFAATTQVL PSYLSFSNPN AADEYFGQEH WDELRPVVDY TIAKSLQYSD W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-491518217171NO APICAL MERISTEM PROTEIN
1ut4_B6e-491518217171NO APICAL MERISTEM PROTEIN
1ut7_A6e-491518217171NO APICAL MERISTEM PROTEIN
1ut7_B6e-491518217171NO APICAL MERISTEM PROTEIN
3swm_A7e-491518220174NAC domain-containing protein 19
3swm_B7e-491518220174NAC domain-containing protein 19
3swm_C7e-491518220174NAC domain-containing protein 19
3swm_D7e-491518220174NAC domain-containing protein 19
3swp_A7e-491518220174NAC domain-containing protein 19
3swp_B7e-491518220174NAC domain-containing protein 19
3swp_C7e-491518220174NAC domain-containing protein 19
3swp_D7e-491518220174NAC domain-containing protein 19
4dul_A6e-491518217171NAC domain-containing protein 19
4dul_B6e-491518217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472100.0KC847210.1 Gossypium hirsutum NAC domain protein NAC33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753414.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK555e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8PT090.0A0A1U8PT09_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGGorai.010G171100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.15e-83NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]