PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_37465_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 342aa MW: 37954.4 Da PI: 9.6129

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_37465_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.7e-05	225	263	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L+ l+ + +K + a++L +A+ YIk Lq Cotton_A_37465_BGI-A2_v1.0 225 RKEKLGDRIAALQHLVAPY-----GKTDTASVLMEAIGYIKFLQ 263 677888999*****999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.09	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.57E-5	223	267	No hit	No description
SuperFamily	SSF47459	5.23E-11	223	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-9	227	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MESENVHHQH QLHHYNQLLV GSSSSSLPWY GVSSSPHSWT PTNTFNTSEF NNNGALLQPW 60 TNHEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN 120 LNQASSMEAF DLLSPSRLTK NSSFKHYSSD DHHLNLASFG HSHQQFQLSN QRLACNNSPS 180 KISSSFNTET LEAKRSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV 240 APYGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR 300 QDLKSRGLCL VPLSCMSYLT TDNGGGGSSG SFWPPPNFSR GI

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MESENVHHQH QLHHYNQLLV GSSSSSLPWY GVSSSPHSWT PTNTFNTSEF NNNGALLQPW  60
TNHEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN  120
LNQASSMEAF DLLSPSRLTK NSSFKHYSSD DHHLNLASFG HSHQQFQLSN QRLACNNSPS  180
KISSSFNTET LEAKRSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV  240
APYGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR  300
QDLKSRGLCL VPLSCMSYLT TDNGGGGSSG SFWPPPNFSR GI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614349.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X2
Swissprot	Q9SFZ3	3e-59	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0D2U6R8	0.0	A0A0D2U6R8_GOSRA; Uncharacterized protein
STRING	Gorai.010G008200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]