PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37411_BGI-A2_v1.0
Common NameF383_13960
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 589aa    MW: 64656.6 Da    PI: 7.9397
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37411_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.23.1e-07238289153
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                                 eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk +++el 
  Cotton_A_37411_BGI-A2_v1.0 238 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLK-RAKELA 289
                                 799****************************************999.555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-4235286No hitNo description
SMARTSM003385.5E-7238302IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-5242293No hitNo description
CDDcd147021.31E-13243294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MELGRGLLSS SCASPTADAA EDALAADRMD MEAAEILAAL AHSKKRVAVS VSAEFGAKWG  60
CKGRRLRKRA SISTESPPSG VGSNPVQSVS DLAEDQATIG QEQSQVISTS VVIESVVAES  120
LNASHPCAER YPSNGVLRSS QNLTKAEKET CRLRRMLTHK ESDWQMIHER PILFSTVGIS  180
EKDIWEDSQL NEMTRNNALI NPVKTEQNAE SVRSSPAGAI KHMSGGGGRS RQNLSEAEKE  240
ARRLRRILAN RESARQTIRR RQALCEKLTL KVTDLTQENE NLKRAKELAL QEYHSQDSAN  300
KHLKAEMAKA LKADEGKTTA ELQLDHHISG PSGNYPYFFY NQHHFLPFGW PSSVQSSHPV  360
QSQCGQNAIF VPSSISSPAN GRLDSSFNQE SPINVNGPKT ALYVVPYPWF FSLPDQRSGL  420
HPQPSCGTID IEDETSVSNH FNAGCHLKPV MNEKFNSSLP VEVEKEAYEP IEASPNSKNC  480
TSVKLPADVG GQCMSYIKEE VLLPGPLCSA GTTFENRTDH VVKTEEAPIG AFHFVGALPE  540
ENKESKSYTS KKVLDAVAAA EARKRRKELT KLKNLHGRHR SPLSLSAKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1562567RKRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738413.10.0PREDICTED: uncharacterized protein LOC107948390 isoform X2
TrEMBLA0A0B0NCD60.0A0A0B0NCD6_GOSAR; G-box-binding factor 1-like protein
STRINGGorai.009G405400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.15e-40bZIP family protein