PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37376_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 294aa    MW: 33257.9 Da    PI: 9.223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37376_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+ Ed llv++v+ +G g+W++ +++ g++R++k+c++rw +yl
  Cotton_A_37376_BGI-A2_v1.0 14 RGPWTPREDTLLVNYVQTHGEGHWRSLPKKAGLHRCGKSCRLRWMNYL 61
                                89********************************************97 PP
2Myb_DNA-binding521.6e-1667112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ +t+Ed+l+++++ +lG++ W++I+ +++ gRt++++k++w++yl
  Cotton_A_37376_BGI-A2_v1.0  67 RGNISTDEDDLIIRLHSLLGNR-WSLISGRLP-GRTDNEIKNYWNTYL 112
                                 7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.007961IPR017930Myb domain
SuperFamilySSF466898.8E-3111108IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241568IPR009057Homeodomain-like
CDDcd001676.11E-111661No hitNo description
PROSITE profilePS5129425.30762116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002497.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2469116IPR009057Homeodomain-like
CDDcd001674.60E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCTKV GLHRGPWTPR EDTLLVNYVQ THGEGHWRSL PKKAGLHRCG KSCRLRWMNY  60
LRPDIKRGNI STDEDDLIIR LHSLLGNRWS LISGRLPGRT DNEIKNYWNT YLSKRLLSQG  120
IDPNTHKKLP KPVVQQVSKR KNSRGSNNKQ NPKKAKTTLE PAVIPKGHLP KPSKVTSIYF  180
PRNDSFDQCN TFSTVCSSQG EEEGMGTQAI QGPWSEYVSN GENGTGFLSE SGCHPRVPSE  240
DDNSLDKLYE EYLQLLKANE DQLQLDAFAE SLLDLIGKKI CMYVCMHAYI KISC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624910.10.0PREDICTED: transcription factor MYB12-like
TrEMBLA0A2P5W0240.0A0A2P5W024_GOSBA; Uncharacterized protein
STRINGGorai.004G150800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-70myb domain protein 3