PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_37143_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 334aa MW: 37188 Da PI: 4.7424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 120 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Cotton_A_37143_BGI-A2_v1.0 120 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 170 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.25E-32 | 120 | 177 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-21 | 121 | 178 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 121 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 121 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-30 | 121 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 121 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDHCSVSSIK YTEHRNQTKL LSPLLNVKVE NQPEMKPRIV RISVTDADAT DSSSDEDEEQ 60 TTRRVKKFVN EITIGSSSCP AQNDAAFRSK SSTLSRNSRK RPAAVAVAKA SSAKVLPAGK 120 KFRGVRQRPW GKWAAEIRDP LRRVRLWLGT YDTAEEAAMV YDNAAIQLRG PDALTNFTTP 180 QQKSLQDKNS QKPLSSSEYN SMEESHTTTT NLCSPTSVLR CPSLSTDEVD SSQSVKESRE 240 IESEPREDSC CISREHVSDF SSNPFSIPSD IFSSVPDLFD DDTSFLKDDL DNGFFSSCED 300 FEFEFGGGFS SWQHVDDHFQ DIGDLFGADP LLAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 119 | 177 | 3 | 62 | ATERF1 |
3gcc_A | 4e-21 | 119 | 177 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625251.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A1U8KSH3 | 0.0 | A0A1U8KSH3_GOSHI; ethylene-responsive transcription factor CRF2-like | ||||
STRING | Gorai.004G135700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-54 | cytokinin response factor 2 |