PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37122_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 501aa    MW: 55859.8 Da    PI: 7.3116
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37122_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP152.62.4e-471172742134
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssss 69 
                                 +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+aikelt++               ss+s
  Cotton_A_37122_BGI-A2_v1.0 117 TGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKAAIKELTENlpalkhrcseggksvSSTS 199
                                 79**************************************************************8888877777665442222 PP

                         TCP  70 aseceaesssssasnsssg.......................kaaksaa.kskksqksaasalnlakesrakarararertre 128
                                 +se+                                      ++ ++a  ++++++++ + ++ +a+esr karararertre
  Cotton_A_37122_BGI-A2_v1.0 200 ESEV--------------VsaakecqdnmgdrqgviasgeamRSTTTARvTKERKSRKVSINHIVARESRDKARARARERTRE 268
                                 2222..............1111222223344555777888886666666588899999999999999**************** PP

                         TCP 129 kmrikn 134
                                 kmr+++
  Cotton_A_37122_BGI-A2_v1.0 269 KMRMRD 274
                                 ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-46117272IPR005333Transcription factor, TCP
PROSITE profilePS5136937.144119177IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.753252269IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MFPSSNSYNP CPSTIHAMPG NSISADQHPA DSSLEDHPPA FFNFPAPFFD DDDDDGLLMS  60
HLLSQAQQQI LGSSSNTAPP DSEINAAPPI KETKKVPPNR KRSSNNGAKQ GIPRKRTGKK  120
DRHSKIYTAH GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFSKS KAAIKELTEN  180
LPALKHRCSE GGKSVSSTSE SEVVSAAKEC QDNMGDRQGV IASGEAMRST TTARVTKERK  240
SRKVSINHIV ARESRDKARA RARERTREKM RMRDLEKTNK CSDESNPNEL EELQSSSPLE  300
IGENSGPSTE TNYSLKVVTE KPHRNTADSD SIEHQMDFVS TIEKFLGITR SSAMFNYSNN  360
IADSREENSA ENCPVFSGNW GMNNERIHYS YCAMTNIKDS TGITQEQNPS IIFMTDPNEQ  420
EQKISSSFMS NSNTQAENST TNLIANSYAK MMNHNSDLTN PSNAHEGRNP TSILMSSSHI  480
GLHSDYHENP AVASKFHHFY L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736275.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A1U8NB890.0A0A1U8NB89_GOSHI; transcription factor TCP12-like
STRINGGorai.008G186800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-32TCP domain protein 12