PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_37093_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 334aa MW: 37663.6 Da PI: 8.5863 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.4 | 7.6e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+y++++d+++++++sw e+ +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ e+ weF+++ Cotton_A_37093_BGI-A2_v1.0 25 FLTKTYQLVDDPTTDHIVSWGEDDTSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANE 98 9****************************************************************999.........****** PP XXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkkse 103 Fkkg k+ll++i+r+k++ Cotton_A_37093_BGI-A2_v1.0 99 FFKKGGKHLLCEIHRRKTT 117 ****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.6E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.9E-61 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.07E-34 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.2E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.8E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.8E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.8E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MALMVDNCEG VLLSLEPHKA VPAPFLTKTY QLVDDPTTDH IVSWGEDDTS FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANEFF KKGGKHLLCE IHRRKTTQPS 120 INHHYHPHIP HSALNAPSFF PFPTQVSISP TDMDDSPPLS SPRGATGGYG SSVTALSEDN 180 ERLRRSNSLL MSELTHMRKL YSDIIYFVQN HVKSITPSNS YSPSWLHSGP PPAVNTNTSL 240 LQKPLNQLLG YYPKSPNPQF QGLNSPTATS QSSLTIVEEP SSNSCKTRLF GVPLHSKKRL 300 HPEYSTAANM ETSKARLILE KDDLRLNLMP SSTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-22 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
5d5v_B | 4e-22 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
5d5v_D | 4e-22 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ683910 | 0.0 | KJ683910.1 Gossypium hirsutum heat shock transcription factor (HSF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641024.1 | 0.0 | PREDICTED: heat stress transcription factor B-4-like isoform X1 | ||||
Swissprot | Q9C635 | 1e-115 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A1U8KNT6 | 0.0 | A0A1U8KNT6_GOSHI; heat stress transcription factor B-4-like | ||||
STRING | Gorai.002G135200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2900 | 28 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-118 | heat shock transcription factor B4 |