PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_37073_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 191aa MW: 21828.8 Da PI: 8.4568

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_37073_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.4e-28	103	161	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C s +C+vkk++er+++ +++v++tYeg Hnhe Cotton_A_37073_BGI-A2_v1.0 103 VDDGYKWRKYGKKSVKNSPNPRNYYKCVSGECNVKKRIERDRDFKSYVITTYEGVHNHE 161 59**************************************9999**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-29	91	163	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-25	96	163	IPR003657	WRKY domain
PROSITE profile	PS50811	28.3	98	163	IPR003657	WRKY domain
SMART	SM00774	2.5E-28	103	162	IPR003657	WRKY domain
Pfam	PF03106	1.3E-21	104	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDFSPNGHSN PKPNSIFFPE NPDPMADFEI SDYLILDAGV FEDDTSEKGM VLYLFRKIMG 60 IFFSFSLLSC LKNCRRCKSG EKKNELGLGH RIAFRMKSEI EAVDDGYKWR KYGKKSVKNS 120 PNPRNYYKCV SGECNVKKRI ERDRDFKSYV ITTYEGVHNH ESPYTSYCNQ MPLLAPNACI 180 SQPSPLSTSS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-21	93	163	7	77	Probable WRKY transcription factor 4
2lex_A	7e-21	93	163	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492284.1	2e-98	PREDICTED: probable WRKY transcription factor 51 isoform X2
TrEMBL	A0A0D2TKU2	4e-97	A0A0D2TKU2_GOSRA; Uncharacterized protein
STRING	Gorai.007G245200.1	7e-98	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-39	WRKY DNA-binding protein 51