PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37043_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 259aa    MW: 29079.5 Da    PI: 8.3135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37043_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Cotton_A_37043_BGI-A2_v1.0 14 RGPWTAREDTLLIKYIQAHGEGHWRSLPKMAGLLRCGKSCRLRWINYL 61
                                89******************************99************97 PP
2Myb_DNA-binding55.41.5e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++l
  Cotton_A_37043_BGI-A2_v1.0  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAKRLP-GRTDNEIKNYWNSHL 112
                                 7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.08961IPR017930Myb domain
SuperFamilySSF466891.91E-3011108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-231568IPR009057Homeodomain-like
CDDcd001674.59E-101661No hitNo description
PROSITE profilePS5129427.4962116IPR017930Myb domain
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002492.9E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2669115IPR009057Homeodomain-like
CDDcd001677.85E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRAPCCSKV GLNRGPWTAR EDTLLIKYIQ AHGEGHWRSL PKMAGLLRCG KSCRLRWINY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAKRLPGRT DNEIKNYWNS HLSKRVLNNS  120
QTNSTTRSSR KAKKATEKKQ KANNVEEKEE IKVLHQPKAS RVSPFSVISR SSSFDSLISG  180
SSSSGEGSKG TNDAYVFDIP SYWSDFAADT NLEFPDAEAF SDATPVGDSN LLDDIFEEYQ  240
KLLDGDDPGE RDSIFDVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591193e-67AJ459119.1 Gossypium hirsutum partial myb102c gene, clone pGhMYB102c.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738141.10.0PREDICTED: myb-related protein 308-like
RefseqXP_017636526.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A1U8NGH40.0A0A1U8NGH4_GOSHI; myb-related protein 308-like
STRINGGorai.004G130900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-66myb domain protein 111