PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37008_BGI-A2_v1.0
Common NameF383_08391
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 429aa    MW: 46410.5 Da    PI: 6.2373
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37008_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.3e-14214269358
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                 + kr+rr+ +NRe+ArrsR+RK+a++ eLe  v +L  e ++L k+l  ++ ++++
  Cotton_A_37008_BGI-A2_v1.0 214 DAKRARRMRSNRESARRSRRRKQAQLNELEAQVGQLRVEHSTLLKRLTDMNHKYDE 269
                                 68******************************************888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-10211266No hitNo description
SMARTSM003381.6E-16212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059214269IPR004827Basic-leucine zipper domain
PfamPF001701.7E-11215268IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-9216266No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
PfamPF124989.6E-25283403IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNTVFSVDDF SDSFWAAPAS DDALGMTRSH SEWALERFLE EFSGAGVAIS GSHAGENVIG  60
PSLMSPQSSV SKVEEGNVVE IKRPNSQNHN HPPSDQTPTV PTDSDDYHTI LKSKLELECA  120
AVALSRALAV KAEDSSAEAE NHALPSGSKV QGSSKVQGQG ETDVAHCGTL TGSTTQKKSG  180
VQVRQATSGL SREDSDSDEL EGDTETADNM DPADAKRARR MRSNRESARR SRRRKQAQLN  240
ELEAQVGQLR VEHSTLLKRL TDMNHKYDEA AVDNRIMKAD IETLRAKVKM AEETVKRVTG  300
FNPALLSRPN VPSVGMPFGS NPLEASTVAP LPFQSNANQF FHQPVPNIVA PIHHQRVDNS  360
FRANTLVPPD VNSQTKGVKN VNETSVLQHG PSLDCVPNQI GPGVSPCGPM PGWEPGLLPH  420
ASDRNHKQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235RRSRRRKQ
2230235SRRRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5773032e-35JX577303.1 Gossypium hirsutum clone NBRI_GE9096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627765.10.0PREDICTED: light-inducible protein CPRF2-like isoform X1
TrEMBLA0A0B0NRA30.0A0A0B0NRA3_GOSAR; Light-inducible CPRF2
STRINGGorai.007G141500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.14e-68basic leucine zipper 25