PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36850_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 281aa    MW: 32165 Da    PI: 6.3926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36850_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.9e-192370148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT eEd ll ++v+++G g+W++ a++ g++Rt+k+c++rw++yl
  Cotton_A_36850_BGI-A2_v1.0 23 RGPWTLEEDSLLTHYVARHGEGHWNLLAKHAGLRRTGKSCRLRWLNYL 70
                                89********************************************97 PP
2Myb_DNA-binding48.71.7e-1576119146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_36850_BGI-A2_v1.0  76 RGNLTPEEQFLILELHCKWGNR-WSKIAQELP-GRTDNEIKNYWRT 119
                                 7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.551874IPR017930Myb domain
SuperFamilySSF466891.26E-3021117IPR009057Homeodomain-like
SMARTSM007179.5E-162272IPR001005SANT/Myb domain
PfamPF002492.5E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232477IPR009057Homeodomain-like
CDDcd001671.88E-112570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007173.9E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.99875125IPR017930Myb domain
PfamPF002492.7E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2378124IPR009057Homeodomain-like
CDDcd001673.71E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSFTKVSSS TSCSEEDTEQ LRRGPWTLEE DSLLTHYVAR HGEGHWNLLA KHAGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQFLILEL HCKWGNRWSK IAQELPGRTD NEIKNYWRTR  120
VQKQARHLKI DANSAAFRNV IRCFWMPRLL QMMKGSSTLP QQVAGLEQQN SDSEQCASSC  180
VSSSESMNNN MSKISEFAEY QTSSFGITDN NEYNTVAKDC YYVDNSSCYG METINLPSTS  240
AVGDFMTADC HMADNNWVND GFADGIWSMG ELWELPLKWN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27211255108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610397.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1U8HQX80.0A0A1U8HQX8_GOSHI; transcription factor MYB108-like
TrEMBLA0A2P5YNI70.0A0A2P5YNI7_GOSBA; Uncharacterized protein
STRINGGorai.006G060300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.19e-76myb domain protein 116