PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36752_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 341aa MW: 38011.7 Da PI: 9.7062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36752_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW Cotton_A_36752_BGI-A2_v1.0 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYW 96 79**************************.89***********8888999************************ PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++++ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl Cotton_A_36752_BGI-A2_v1.0 97 KATGTDKPIVTSnGNQKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 142 *****99867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-65	8	177	IPR003441	NAC domain
PROSITE profile	PS51005	62.789	15	177	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MESTDSSSAS AHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIVTSNG NQKVGVKKAL 120 VFYRGKPPKG IKTNWIMHEY RLIDNNSSTS KPQIVDLPNR KASLRLDDWV LCRIYKKNNT 180 QRPMETDKEY TMEGMLATQL PTSSHQNLNA LTSKATSYGS LLQHEDNFFE GILTEGMRSS 240 SNISQLAVSS SSKQNLPMAF PVKRTLPPQY WNEPSSTGSQ SGKRFQQGDI NCSSRGGNID 300 DTNSFVSLLN QLPQNTPFYT GSMVGSLGDG VSRQQFILPG S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	15	180	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	15	180	20	171	NAC domain-containing protein 19
3swm_B	1e-75	15	180	20	171	NAC domain-containing protein 19
3swm_C	1e-75	15	180	20	171	NAC domain-containing protein 19
3swm_D	1e-75	15	180	20	171	NAC domain-containing protein 19
3swp_A	1e-75	15	180	20	171	NAC domain-containing protein 19
3swp_B	1e-75	15	180	20	171	NAC domain-containing protein 19
3swp_C	1e-75	15	180	20	171	NAC domain-containing protein 19
3swp_D	1e-75	15	180	20	171	NAC domain-containing protein 19
4dul_A	1e-75	15	180	17	168	NAC domain-containing protein 19
4dul_B	1e-75	15	180	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610410.1	0.0	PREDICTED: NAC transcription factor 25-like
Swissprot	A0SPJ9	1e-109	NAM2_HORVV; NAC transcription factor NAM-2
Swissprot	Q8GY42	1e-109	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2P5QMM1	0.0	A0A2P5QMM1_GOSBA; Uncharacterized protein
STRING	Gorai.009G170700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-111	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]