PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36707_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 222aa    MW: 23568.5 Da    PI: 9.9651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36707_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-212776255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Cotton_A_36707_BGI-A2_v1.0 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76
                                69*******.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-402790IPR001471AP2/ERF domain
CDDcd000181.64E-182784No hitNo description
Gene3DG3DSA:3.30.730.108.3E-332784IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232785IPR016177DNA-binding domain
PROSITE profilePS5103223.9992784IPR001471AP2/ERF domain
PfamPF008472.0E-142776IPR001471AP2/ERF domain
PRINTSPR003674.4E-112839IPR001471AP2/ERF domain
PRINTSPR003674.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPQDKNASK ILKKANVTGS TSSQEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGPKAK TNFPLPDETN CYKGQNQQSP SQSSTVEESG SPTVERGVNT  120
VTGAVGRFPF ACHQQLALGG GVANGGISGV TQSRPVLFFE ALGGAGVVGQ VYPVRFDPVG  180
VQLGMGFASV VRSEPDSSSA IHCKARRPGL VLDLNLPPPV DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212785261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-212785564ATERF1
3gcc_A2e-212785564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0821080.0EU082108.1 Gossypium barbadense ethylene-responsive element binding protein (EREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608586.11e-163PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE679e-58ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A1U8HQV31e-161A0A1U8HQV3_GOSHI; ethylene-responsive transcription factor 9-like
TrEMBLA0A2P5XHC71e-161A0A2P5XHC7_GOSBA; Uncharacterized protein
STRINGGorai.005G200200.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-39erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]