PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36695_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 377aa    MW: 41989.7 Da    PI: 7.8673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36695_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-5251321128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+W
  Cotton_A_36695_BGI-A2_v1.0   5 MLPGFRFHPTDEELVGFYLKRKIQQRPLSV-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFW 86 
                                 579***************************.89***************8888999**************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Cotton_A_36695_BGI-A2_v1.0  87 KATGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 132
                                 ***********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-585165IPR003441NAC domain
PROSITE profilePS5100557.0645165IPR003441NAC domain
PfamPF023651.2E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEEIMLPGFR FHPTDEELVG FYLKRKIQQR PLSVELIKQL DIYKYDPWDL PKLATTGEKE  60
WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL VFYKGRAAKG  120
VKTDWMMHEF RLPSLTDSAP TPPKRFLDKC LPANDSWAIC RIFKKTNSTA QRALCHSWVS  180
PIPETSSISD MLSRGSDTSQ LSSDNISLTP KTSSSPVQFN LISNTDLLQT SSAAFSPLDF  240
VPYKPLSQMA PQLPISNGDL TSLIFAPLDQ TPSPAKSAVD VTSVLLNMSS SMLGEYDSTV  300
HFHGGSQDHC TGFSSGTLPH GMQGNMVINN EDHENALLKN LNVTHVDDQW DGIRSIGFPF  360
SLPLPMSVAD AWKPSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-53717219171NO APICAL MERISTEM PROTEIN
1ut4_B1e-53717219171NO APICAL MERISTEM PROTEIN
1ut7_A1e-53717219171NO APICAL MERISTEM PROTEIN
1ut7_B1e-53717219171NO APICAL MERISTEM PROTEIN
4dul_A1e-53717219171NAC domain-containing protein 19
4dul_B1e-53717219171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472270.0KC847227.1 Gossypium hirsutum NAC domain protein NAC50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636821.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-117FEZ_ARATH; Protein FEZ
TrEMBLA0A2P5X1B20.0A0A2P5X1B2_GOSBA; Uncharacterized protein
STRINGGorai.005G141200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-119NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]