PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36663_BGI-A2_v1.0

Common Name

F383_05305

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 379aa MW: 40805.6 Da PI: 9.5508

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36663_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	72.9	4.5e-23	260	322	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+ Cotton_A_36663_BGI-A2_v1.0 260 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 322 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	7.6E-35	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	4.8E-22	128	244	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-18	253	319	No hit	No description
SMART	SM00338	2.2E-22	260	324	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-21	260	322	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.748	262	325	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-11	263	319	No hit	No description
CDD	cd14702	1.83E-22	265	314	No hit	No description
PROSITE pattern	PS00036	0	267	282	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGSSDEGKSS KSDKSSSPAP PDQTNIHVYP DWAAMQAYYS PRVPMPPYYN SAVASGHAPP 60 PYMWGPTQAI MPPYGTPYAA IYPHGGVYVH PTVPMGSHGH GVPSSPKSIV MQAAPETPTK 120 SSGNTNGGLM KKLKGFDGLA MSIGNSTAEN AESGAEPRPS QSAETEGSID DSDGNTTGAD 180 QTRRKRVREG TPPIGVEGNN EARSKPVAAR EATATISPKV VGSVLPPGMT TSLELSNPPA 240 KSSPTNVPRV MPSEIWLQKE RELKRERRKQ SNRESARRSR LRKQAETEEL ARKVESLTAE 300 NTTLRSEINQ LTEKSEKLRL ENATLVEGLK NGELGYAKDI IMNKKADKEG EMYEKKSNSG 360 AKLHQLFDPS PRADAVAAS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGSSDEGKSS KSDKSSSPAP PDQTNIHVYP DWAAMQAYYS PRVPMPPYYN SAVASGHAPP  60
PYMWGPTQAI MPPYGTPYAA IYPHGGVYVH PTVPMGSHGH GVPSSPKSIV MQAAPETPTK  120
SSGNTNGGLM KKLKGFDGLA MSIGNSTAEN AESGAEPRPS QSAETEGSID DSDGNTTGAD  180
QTRRKRVREG TPPIGVEGNN EARSKPVAAR EATATISPKV VGSVLPPGMT TSLELSNPPA  240
KSSPTNVPRV MPSEIWLQKE RELKRERRKQ SNRESARRSR LRKQAETEEL ARKVESLTAE  300
NTTLRSEINQ LTEKSEKLRL ENATLVEGLK NGELGYAKDI IMNKKADKEG EMYEKKSNSG  360
AKLHQLFDPS PRADAVAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	282	RRSRLRK
2	276	283	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635172.1	0.0	PREDICTED: G-box-binding factor 3-like isoform X2
Swissprot	P42776	1e-123	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A0B0Q187	0.0	A0A0B0Q187_GOSAR; G-box-binding factor 3-like protein
STRING	Gorai.008G123200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-109	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]