PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36537_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26651.6 Da    PI: 8.7025
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36537_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-28959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  Cotton_A_36537_BGI-A2_v1.0  9 KRIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFEFSS 59
                                79***********************************************96 PP
2K-box62.31.9e-2182160987
                       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                 +e++ +++ ++e+++Lk+e+ +Lq +q +llG++L+s slkeL+ LeqqL ++l+++++kK++ll+eq+e+++ + +el
  Cotton_A_36537_BGI-A2_v1.0  82 VEHKAEKQVCKEADNLKDEVAKLQMKQLQLLGKNLTSVSLKELEVLEQQLSEGLSSVKEKKEQLLMEQLERSRLQVEEL 160
                                 56777899****************************************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.52161IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-42160IPR002100Transcription factor, MADS-box
CDDcd002653.52E-42272No hitNo description
SuperFamilySSF554551.01E-32283IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.4E-1683160IPR002487Transcription factor, K-box
PROSITE profilePS5129711.12287173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAKELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKKTFSRYN KCLQGSIEMA LVEHKAEKQV CKEADNLKDE VAKLQMKQLQ LLGKNLTSVS  120
LKELEVLEQQ LSEGLSSVKE KKEQLLMEQL ERSRLQVEEL RGFFPSTDHL VRSYLEYYPV  180
ERKNSLMSHN IRGPDVTCAC NLEKGDSDTT LYLGLPSDHP KIKKPESHSN DSESQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21169169MEF2C
5f28_B5e-21169169MEF2C
5f28_C5e-21169169MEF2C
5f28_D5e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (2,4-D). Feedback loop leading to direct down-regulation by itself. {ECO:0000269|PubMed:15686521}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556620.0KC155662.1 Gossypium hirsutum MADS box protein MADS67 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623688.11e-168PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ388472e-75AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLA0A2P5QEN81e-168A0A2P5QEN8_GOSBA; Uncharacterized protein
STRINGGorai.004G169000.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-61AGAMOUS-like 15
Publications ? help Back to Top
  1. Zheng Q,Zheng Y,Perry SE
    Decreased GmAGL15 expression and reduced ethylene synthesis may contribute to reduced somatic embryogenesis in a poorly embryogenic cultivar of Glycine max.
    Plant Signal Behav, 2014.
    [PMID:23838957]
  2. Perry SE,Zheng Q,Zheng Y
    Transcriptome analysis indicates that GmAGAMOUS-Like 15 may enhance somatic embryogenesis by promoting a dedifferentiated state.
    Plant Signal Behav, 2016. 11(7): p. e1197463
    [PMID:27302197]
  3. Cosio C, et al.
    The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation.
    New Phytol., 2017. 213(1): p. 250-263
    [PMID:27513887]
  4. Zheng Q,Zheng Y,Ji H,Burnie W,Perry SE
    Gene Regulation by the AGL15 Transcription Factor Reveals Hormone Interactions in Somatic Embryogenesis.
    Plant Physiol., 2016. 172(4): p. 2374-2387
    [PMID:27794101]
  5. Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD
    HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 600-619
    [PMID:29475938]