PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36420_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 254aa    MW: 28877.4 Da    PI: 7.1787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36420_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.61.6e-4251352127
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 
                                 +pGfrF Pt+eelv++yL++k+e ++      +++vi+ v+iy+++PwdLp   ++++ ++w+fF++r++++a+g +++r t+
  Cotton_A_36420_BGI-A2_v1.0   5 APGFRFYPTEEELVSFYLHHKLEMERedlnRLMDRVIPIVNIYEFNPWDLPlYLCHKDPEQWFFFIPRQESEARGGKPKRRTT 87 
                                 69********************99995653223347***************656666778********************9** PP

                         NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                 +gyWkatg+   v++++++ +g+k+t+vfykgrap+g kt+W m+ey+
  Cotton_A_36420_BGI-A2_v1.0  88 TGYWKATGSPGFVYCSGNRPIGVKRTMVFYKGRAPNGIKTEWKMNEYK 135
                                 ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-454162IPR003441NAC domain
PROSITE profilePS5100546.3154162IPR003441NAC domain
PfamPF023653.7E-226135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEDIAPGFRF YPTEEELVSF YLHHKLEMER EDLNRLMDRV IPIVNIYEFN PWDLPLYLCH  60
KDPEQWFFFI PRQESEARGG KPKRRTTTGY WKATGSPGFV YCSGNRPIGV KRTMVFYKGR  120
APNGIKTEWK MNEYKAIEQG ASSISATPTL RHEFSLCRVY KKSKCLRSFD RQPPVGGVQI  180
IKPNAAAHQG EATAGEAASG YHKSQQMAGS PESSSSEDHG NPSQTGASND SSATVFNYDE  240
LFWNLDGFWE SQIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-32416217165NO APICAL MERISTEM PROTEIN
1ut4_B3e-32416217165NO APICAL MERISTEM PROTEIN
1ut7_A3e-32416217165NO APICAL MERISTEM PROTEIN
1ut7_B3e-32416217165NO APICAL MERISTEM PROTEIN
4dul_A3e-32416217165NAC domain-containing protein 19
4dul_B3e-32416217165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739504.10.0PREDICTED: NAC domain-containing protein 90-like isoform X2
SwissprotQ9FMR34e-64NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8NNI50.0A0A1U8NNI5_GOSHI; NAC domain-containing protein 90-like isoform X2
STRINGGorai.009G399900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]