PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36342_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 236aa    MW: 28026.7 Da    PI: 8.7745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36342_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191865148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Cotton_A_36342_BGI-A2_v1.0 18 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 65
                                79********************************************97 PP
2Myb_DNA-binding521.6e-1671115147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Cotton_A_36342_BGI-A2_v1.0  71 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
                                 7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1531369IPR017930Myb domain
SuperFamilySSF466891.25E-3015112IPR009057Homeodomain-like
SMARTSM007173.9E-171767IPR001005SANT/Myb domain
PfamPF002495.1E-181865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241972IPR009057Homeodomain-like
CDDcd001671.69E-112065No hitNo description
SMARTSM007171.4E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129419.3570120IPR017930Myb domain
PfamPF002499.1E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2473119IPR009057Homeodomain-like
CDDcd001673.08E-975116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMGEQFGWGV IEEEGWRKGP WTAEEDRLLI EYVRLHGEGR WNSVARLAGL KRNGKSCRLR  60
WVNYLRPDLK RGQITPHEES IILELHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKA  120
KLSPENSDQA KARTLKRQHF QQQLLQQKQQ QQYLQLNESD MKRMMSLLEE TEPKAQYMPQ  180
LRQEMGAATS CPNMVEEQSL FYPMGNDNET SNEDVVWDGL WNLDDYQWKL WCSKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271812027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610456.11e-176PREDICTED: transcription factor MYB24-like
TrEMBLA0A2P5YB091e-174A0A2P5YB09_GOSBA; Uncharacterized protein
STRINGGorai.006G073500.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.19e-84myb domain protein 79