PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36314_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 979aa MW: 108544 Da PI: 5.3212 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Cotton_A_36314_BGI-A2_v1.0 39 KGQWTAEEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.3 | 5.6e-21 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l Cotton_A_36314_BGI-A2_v1.0 91 KGPWSKEEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 2e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ lv+a++ +G++ W+ + ++ gRt++ +k++w+ Cotton_A_36314_BGI-A2_v1.0 143 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.703 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-15 | 35 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.59E-13 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 34.005 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-20 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-19 | 91 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-28 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 140 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.759 | 142 | 192 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-13 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-11 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence Send to blast |
MESDIKVSTL SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAEEDDIL SKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKYG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPS INREAWTQEE ELALVRAHQI FGNRWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYIASGL LEQLQFPVLA NQSQPMPSSS MRMQSIVDDS GAKCRKESED 240 ISECSQESNM IGCSQSASDL TTAAVHTREQ FHLAEMPGVS KERNSSSAPC SEEYYPSFED 300 VNFSIPEIPC EVGYSSSGDY QFGEHMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE 360 LGGCTNTSLC QPSDIQPSET RKTPASQSSL PSRSEVLQTS CCQSFASPSF LSVEDGTLMH 420 GQEQSQLNCQ PFGTQEQEFT MNAHDGFIFT NDDHTNDTDL QEQTYLAKDS QKLVSVNSIG 480 SELSAMLTCP IADDKRNLPA EQDVRGLCYE PPRFPSLDVP FFSCDLIPSG GNMQQEYSPL 540 GIRQVMMSSM NCISPFRLWD SPSWDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER 600 RREKKLEIDM TSSLTRDFSR LDVVFDESVT GNTSQVSPSK RKTNARASIE EKENVCQEFH 660 GSLDNGGDHT EALDDEAQKK DSNGTNSPGN IKKEAWRTDI EDKTDAHASE KIIKQPSAVL 720 IEHNVNDLLL FSPDRVGLKA DQPLLSSSIR TPRNQCHKSF RAISNQGLSG NACLIVSSPT 780 LKVKNSDGHS ISVTAVQCTN SPATLENLAD DAGIDTSIEN YNIFGGTPFR RSIESPSAWK 840 SPWFINSFIP GPRIDTEITI EDIGYVMSPA ERSYDAIGLM KQLSEHTAAA YADALEVLGN 900 ETPKSIVKGR LPNNRNMDKE NNGVENRSHL TSNILAERRI LDFSDCETPR KETENGKSST 960 TAAAVSFSSP SSYLLKGCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-69 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-69 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 598 | 605 | ERRREKKL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646326.1 | 0.0 | PREDICTED: uncharacterized protein LOC108486667 | ||||
Refseq | XP_017646327.1 | 0.0 | PREDICTED: uncharacterized protein LOC108486667 | ||||
TrEMBL | A0A1U8IL04 | 0.0 | A0A1U8IL04_GOSHI; uncharacterized protein LOC107896414 | ||||
STRING | Gorai.010G110000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |