PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36314_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 979aa    MW: 108544 Da    PI: 5.3212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36314_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-183985148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Cotton_A_36314_BGI-A2_v1.0 39 KGQWTAEEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                                799****************************9.************986 PP

2Myb_DNA-binding66.35.6e-2191137148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Cotton_A_36314_BGI-A2_v1.0  91 KGPWSKEEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                                 79******************************.*************97 PP

3Myb_DNA-binding48.52e-15143185145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 r +WT+eE++ lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Cotton_A_36314_BGI-A2_v1.0 143 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185
                                 789*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7033485IPR017930Myb domain
SuperFamilySSF466892.3E-153592IPR009057Homeodomain-like
SMARTSM007171.2E-143887IPR001005SANT/Myb domain
PfamPF002492.4E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-214092IPR009057Homeodomain-like
CDDcd001673.59E-134285No hitNo description
PROSITE profilePS5129434.00586141IPR017930Myb domain
SuperFamilySSF466891.87E-3188184IPR009057Homeodomain-like
SMARTSM007174.5E-2090139IPR001005SANT/Myb domain
PfamPF002491.4E-1991137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2893139IPR009057Homeodomain-like
CDDcd001671.18E-1793137No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21140192IPR009057Homeodomain-like
SMARTSM007171.2E-14142190IPR001005SANT/Myb domain
PROSITE profilePS5129418.759142192IPR017930Myb domain
PfamPF002494.3E-13143186IPR001005SANT/Myb domain
CDDcd001672.38E-11145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MESDIKVSTL SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAEEDDIL SKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKYG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPS INREAWTQEE ELALVRAHQI FGNRWAELTK FLPGRTDNAI  180
KNHWNSSVKK KLDSYIASGL LEQLQFPVLA NQSQPMPSSS MRMQSIVDDS GAKCRKESED  240
ISECSQESNM IGCSQSASDL TTAAVHTREQ FHLAEMPGVS KERNSSSAPC SEEYYPSFED  300
VNFSIPEIPC EVGYSSSGDY QFGEHMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE  360
LGGCTNTSLC QPSDIQPSET RKTPASQSSL PSRSEVLQTS CCQSFASPSF LSVEDGTLMH  420
GQEQSQLNCQ PFGTQEQEFT MNAHDGFIFT NDDHTNDTDL QEQTYLAKDS QKLVSVNSIG  480
SELSAMLTCP IADDKRNLPA EQDVRGLCYE PPRFPSLDVP FFSCDLIPSG GNMQQEYSPL  540
GIRQVMMSSM NCISPFRLWD SPSWDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER  600
RREKKLEIDM TSSLTRDFSR LDVVFDESVT GNTSQVSPSK RKTNARASIE EKENVCQEFH  660
GSLDNGGDHT EALDDEAQKK DSNGTNSPGN IKKEAWRTDI EDKTDAHASE KIIKQPSAVL  720
IEHNVNDLLL FSPDRVGLKA DQPLLSSSIR TPRNQCHKSF RAISNQGLSG NACLIVSSPT  780
LKVKNSDGHS ISVTAVQCTN SPATLENLAD DAGIDTSIEN YNIFGGTPFR RSIESPSAWK  840
SPWFINSFIP GPRIDTEITI EDIGYVMSPA ERSYDAIGLM KQLSEHTAAA YADALEVLGN  900
ETPKSIVKGR LPNNRNMDKE NNGVENRSHL TSNILAERRI LDFSDCETPR KETENGKSST  960
TAAAVSFSSP SSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1598605ERRREKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646326.10.0PREDICTED: uncharacterized protein LOC108486667
RefseqXP_017646327.10.0PREDICTED: uncharacterized protein LOC108486667
TrEMBLA0A1U8IL040.0A0A1U8IL04_GOSHI; uncharacterized protein LOC107896414
STRINGGorai.010G110000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4