PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36154_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 734aa MW: 82026.5 Da PI: 6.7046 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.6e-24 | 189 | 289 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+kvlt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD Cotton_A_36154_BGI-A2_v1.0 189 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 271 99****************************9555556679******************************************* PP EEEEEE-SSSEE..EEEEE- CS B3 79 fvvFkldgrsefelvvkvfr 98 ++vF + +++el+v+v+r Cotton_A_36154_BGI-A2_v1.0 272 SFVFL--RGENGELRVGVRR 289 *****..449999*****98 PP | |||||||
2 | Auxin_resp | 105 | 8.9e-35 | 315 | 394 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p W++SkWrsLk Cotton_A_36154_BGI-A2_v1.0 315 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFTVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-YWKDSKWRSLK 394 789***************6..9*************************************************.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-41 | 177 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-41 | 182 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.37E-21 | 187 | 289 | No hit | No description |
Pfam | PF02362 | 2.3E-22 | 189 | 289 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-24 | 189 | 291 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.351 | 189 | 291 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-32 | 315 | 394 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.3E-7 | 588 | 657 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.91E-15 | 614 | 697 | No hit | No description |
PROSITE profile | PS51745 | 28.257 | 621 | 702 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.6E-4 | 644 | 695 | No hit | No description |
Pfam | PF02309 | 3.2E-7 | 667 | 706 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MSLGFITRAN HPVACFEAAN ERDVKNNTVN PNHTHPNAPP SSVPKTPLRN GFPSVGESSI 60 MANRGGVFSQ TNNVSSEGNG GDDLYMELWK LCAGPLVEAP RARERVYYFP QGHMEQLEAS 120 TNQELNQRIP LFNLPSKILC SVVHIQFLAE QETDEVYAQI TLMPEPNQPE PTTPDACLPE 180 PPKPTVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM NQATPTQELV AKDLHGYEWR 240 FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRV ARQQSSMPTS 300 VISSQSMHLG VLATASHAVS TQTLFVVYYK PRTSQFIIGL NKYLEALSNK FTVGMRFKMR 360 FEGEDSPERR FSGTIVGVED FSPYWKDSKW RSLKVQWDEP ASIPRPDRVS PWEIEPFAAP 420 IPPTLDLSST ASAPWNSGVM HTHDLMRRNI TAEANRNENH VIWHMQTEMS SSCTSVLKTQ 480 NEGSWLSSPC MSVSKHRFPD ARDDSKCASG WPVLSGLSNP QVNNDSTFDP KEKVKKSETA 540 SSCRLFGIEL INHSASSRRL ERTPTQLSTM TASTAEGHHT LSPNNSCQKS EISKDSNEKQ 600 EQLQLQAKEI QSRQSCPSST RSRTKVQMQG VAVGRAVDLA MLEGYDQLID ELEEMFDIKG 660 ELRPRNKWEI VYTDDEGDMM LVGDDPWQEF CSMVRRIFIC LSQDVKKLST GSKLPMACIE 720 GGEGTVISSE SIEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 72 | 417 | 4 | 355 | Auxin response factor 1 |
4ldw_A | 1e-178 | 72 | 417 | 4 | 355 | Auxin response factor 1 |
4ldw_B | 1e-178 | 72 | 417 | 4 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585015 | 8e-58 | JX585015.1 Gossypium hirsutum clone NBRI_GE18462 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641962.1 | 0.0 | PREDICTED: auxin response factor 9-like | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0B0NAI6 | 0.0 | A0A0B0NAI6_GOSAR; Auxin response factor | ||||
STRING | Gorai.003G078000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |