PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36122_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 15264.2 Da PI: 9.505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 8 | 56 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa a++ a +l+g Cotton_A_36122_BGI-A2_v1.0 8 FRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAACAYDTAVFYLRG 56 8****999.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.2E-34 | 7 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.048 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-20 | 8 | 65 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.51E-26 | 8 | 66 | No hit | No description |
Pfam | PF00847 | 1.4E-9 | 8 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 8 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 46 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MQHHQQPFRG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP IAAACAYDTA VFYLRGPSAR 60 LNFPDLILQE DDELRDISPA SIRKKATEVG AKVVALHTTS LHHHHASNSS ESSNPPRVFS 120 KPDLNKYPET SDED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 8 | 64 | 6 | 63 | ATERF1 |
3gcc_A | 3e-15 | 8 | 64 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641012.1 | 1e-97 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 1e-49 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2P5XBP3 | 2e-75 | A0A2P5XBP3_GOSBA; Uncharacterized protein | ||||
STRING | EOY14400 | 7e-71 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 7e-48 | related to AP2 1 |
Publications ? help Back to Top | |||
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