PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36089_BGI-A2_v1.0
Common NameF383_27735
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 563aa    MW: 61213.9 Da    PI: 7.816
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36089_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24214258145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cotton_A_36089_BGI-A2_v1.0 214 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 258
                                 79****************************************985 PP
2QLQ59.97.4e-21144180137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 ++FT +Q+++L++Q+l+yKy+ an+P+P+ Ll +i+k
  Cotton_A_36089_BGI-A2_v1.0 144 GPFTSSQWMELEHQALIYKYMTANVPIPSTLLIPIRK 180
                                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-11144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-14145179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.018145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663214258IPR014977WRC domain
PfamPF088796.6E-21215257IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDFGVVGLEG IVGSETSTGF TLVASESETK QKLYGSAFLK QKRSGSNEDD WRSSKLAKFD  60
DISASKAVLS QHRNTLFRSN TSIFFDGQQQ QQMLSFSAPK LEALSMGRSS QNVIFPYFHL  120
TSPACTRNTG YNTGGFNGAN MNGGPFTSSQ WMELEHQALI YKYMTANVPI PSTLLIPIRK  180
ALDSAGFSSF SGGLLRPNTL GWGAFHLGFS NNTDPEPGRC RRTDGKKWRC SRDAVADQKY  240
CERHMNRGRH RSRKPVEGQS GRSTASTTTT TTKLMHSVSF SSASVVGPNG GNGESNSLTI  300
AQQQTAGESN LSHSGPLNRW LLNKESIGER MHDTAPGNEF GVVSSESLLN PSHKSYSLIK  360
CINFGCSQDL DSQETESHRS VRQFFDGWPK TQSDCSSIFL PEADVQSDRT QLSISMPMAL  420
SDFMSSTSSP NNEDVTHSPL QLSRELDPIQ MGLGVGSVGN ETNWRQANWI PISRETSMGG  480
PLGEVLHSNN SSSAECKNSS ALNIMTEKCD HSPRLGLSPT GVLQKTMFGW HSNSSAGSSP  540
RAENNKNDLL GSTIVHSSSL PAL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422967e-64KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632007.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1U8NSZ70.0A0A1U8NSZ7_GOSHI; growth-regulating factor 1-like isoform X2
STRINGGorai.005G098700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-94growth-regulating factor 1