PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_36063_BGI-A2_v1.0 | ||||||||
Common Name | F383_08747, F383_18144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39714.4 Da PI: 6.7263 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.6 | 3.5e-51 | 15 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd +k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++ Cotton_A_36063_BGI-A2_v1.0 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIQDVDHNKLEPWDIQEscKIGTtPQNDWYFFSHKDKKYPTGTRTNRATAA 96 69****************************.9***************963433332456************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrle Cotton_A_36063_BGI-A2_v1.0 97 GFWKATGRDKVICS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 144 ************99.8889****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-57 | 9 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MPENMSISVN GQTHVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIQDV DHNKLEPWDI 60 QESCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVICS NCRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLEDNIAET NMVSNAMGKG PQEEGWVICR VFKKKNHHKT 180 LDSHISSSLT EKARDRMFRA FNDGALEQIL EYMERNCKDD SEANNGTSRR FLSPMETSTS 240 NVYPADSFME LPSLESPNSA SSQSCYQPML TDNECSITNQ VSGDPNSVGN SNSRLTNWAV 300 LDRLVASQLN GQTETCRQLA CFDDHTTAYC SPSITDHLDL QLPALRSGL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-48 | 9 | 176 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847218 | 0.0 | KC847218.1 Gossypium hirsutum NAC domain protein NAC41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645180.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-128 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0B0P910 | 0.0 | A0A0B0P910_GOSAR; NAC domain-containing 43-like protein | ||||
STRING | Gorai.001G150800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-120 | NAC family protein |