PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36036_BGI-A2_v1.0

Common Name

F383_01699

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 213aa MW: 24944.1 Da PI: 7.5821

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36036_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ a+ g++Rt+k+c++rw++yl Cotton_A_36036_BGI-A2_v1.0 15 KGPWTMEEDLILINYIATHGEGVWNNLAKAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	55.6	1.2e-17	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Cotton_A_36036_BGI-A2_v1.0 68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-23	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.971	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-30	13	109	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.28E-10	17	62	No hit	No description
PROSITE profile	PS51294	25.859	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-25	66	117	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.26E-12	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDKKPCKSQD VEVRKGPWTM EEDLILINYI ATHGEGVWNN LAKAAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHINKQ 120 AEMFSFNIST PELLDHQAST SQLPCNGSTS FMETYSPMSS FNHCNLEPFP GQQQEVQQQQ 180 QQQPQQQHIV DQPNNESYWS MEDFWSMQLL NGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	12	117	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483815.1	1e-157	PREDICTED: myb-related protein 305-like
Swissprot	P81391	3e-93	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A0B0P535	1e-160	A0A0B0P535_GOSAR; Myb-related protein
STRING	Gorai.006G030800.1	1e-157	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	4e-87	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]