PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35986_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 242aa MW: 26442.8 Da PI: 9.3808 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.7 | 1.3e-25 | 129 | 173 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ Cotton_A_35986_BGI-A2_v1.0 129 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 173 79****************************************997 PP | |||||||
2 | QLQ | 43.2 | 1.2e-15 | 60 | 94 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP +Ll++++k Cotton_A_35986_BGI-A2_v1.0 60 FTVFQLQELQLQSLIYKYMEAGLPVPNHLLLPLWK 94 8888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-5 | 58 | 94 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.481 | 59 | 94 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-10 | 60 | 93 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.824 | 129 | 173 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-21 | 130 | 172 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEPQYTPLKI ARFADFGIGL TNMESNMLSG GEGSPPIGLG LELGRGSDHR PTGFTKSCGF 60 TVFQLQELQL QSLIYKYMEA GLPVPNHLLL PLWKSVAGSL GGLHANPYQL YSSYLGCGPL 120 HLEYKNGVDP EPGRCRRTDG KKWRCSKEAV PDHKYCERHM HRGRQRSRKL VEASQATSSG 180 SRIIRHGNAD TNLSISLQLD NSNTSSSGSS GNLSSGFIGF SPKSVLRGSN PKSESSIQFQ 240 EI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586465 | 6e-90 | JX586465.1 Gossypium hirsutum clone NBRI_GE20297 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616779.1 | 1e-179 | PREDICTED: growth-regulating factor 10-like | ||||
TrEMBL | A0A1U8MCS7 | 1e-176 | A0A1U8MCS7_GOSHI; growth-regulating factor 10-like | ||||
STRING | Gorai.008G241800.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16724 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-35 | growth-regulating factor 2 |