PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35956_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 17276.4 Da PI: 10.6213 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.7 | 2.6e-13 | 67 | 121 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NR +ArrsR RK+ +e+L+++vk+L+ +N++L ++l++l+++ l Cotton_A_35956_BGI-A2_v1.0 67 RKRRRMISNRASARRSRMRKRNHLENLTNEVKQLQIQNQELNNRLKSLSDHNHCL 121 5789********************************************9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-14 | 58 | 122 | No hit | No description |
SMART | SM00338 | 6.1E-13 | 63 | 127 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.415 | 65 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.0E-12 | 67 | 123 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.63E-12 | 67 | 121 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 70 | 85 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MLDNDPIPDI ETNIMKWDWS EIFSPGQSTG SARSSGTGSD EAKQSLTGGS TSSLKDPNQR 60 VPTIDERKRR RMISNRASAR RSRMRKRNHL ENLTNEVKQL QIQNQELNNR LKSLSDHNHC 120 LRIDNNRVRF DCSILQQEVL DMRQLLVFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 70 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609392.1 | 1e-106 | PREDICTED: bZIP transcription factor 53-like | ||||
TrEMBL | A0A1U8I196 | 1e-103 | A0A1U8I196_GOSHI; bZIP transcription factor 53-like | ||||
STRING | Gorai.006G054500.1 | 5e-92 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22417 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 2e-11 | basic leucine-zipper 5 |